RNA id: TU1954147


Basic Information

Item Value
RNA id TU1954147
length 283
lncRNA type intronic
GC content 0.49
exon number 2
gene id G1706277
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10447501 ~ 10450684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagggagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagagagagagagagagagagagagagagagagagagagagagatacagagagagagagagagagagagagagagagagagagagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954103 lncRNA upstream 40153 10406074 ~ 10407348 (+) False G1706261
TU1954069 lncRNA upstream 40153 10406192 ~ 10407348 (+) False G1706261
TU1954070 lncRNA upstream 40153 10406192 ~ 10407348 (+) False G1706261
TU1954072 lncRNA upstream 40153 10406192 ~ 10407348 (+) False G1706261
TU1954074 lncRNA upstream 40153 10406192 ~ 10407348 (+) False G1706261
TU1954151 lncRNA downstream 176 10450860 ~ 10458562 (+) False G1706278
TU1954150 lncRNA downstream 7382 10458066 ~ 10458562 (+) True G1706278
TU1954177 lncRNA downstream 65197 10515881 ~ 10517090 (+) True G1706302
TU1954235 lncRNA downstream 134965 10585649 ~ 10587832 (+) True G1706346
TU1954239 lncRNA downstream 138421 10589105 ~ 10589692 (+) True G1706349
XM_021591905.2 mRNA upstream 124397 10321192 ~ 10323104 (+) True LOC110510583
XM_036958460.1 mRNA upstream 349477 10070476 ~ 10098024 (+) True LOC118942996
XR_005038521.1 mRNA upstream 466364 9980795 ~ 9981137 (+) True LOC118942870
XM_021594958.2 mRNA upstream 576912 9868402 ~ 9870589 (+) True LOC110516560
XM_036956808.1 mRNA upstream 582758 9824850 ~ 9864743 (+) False LOC118942868
XM_036956822.1 mRNA downstream 72262 10522946 ~ 10698614 (+) False LOC110490805
XM_036956823.1 mRNA downstream 72262 10522946 ~ 10698614 (+) False LOC110490805
XM_036956824.1 mRNA downstream 72262 10522946 ~ 10698614 (+) False LOC110490805
XM_036956825.1 mRNA downstream 72262 10522946 ~ 10698614 (+) False LOC110490805
XM_036956826.1 mRNA downstream 72262 10522946 ~ 10698614 (+) False LOC110490805
TU1953937 other upstream 312117 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 529482 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 694028 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 787361 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 791783 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 658744 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 820045 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 947356 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 947356 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 947356 11398040 ~ 11399288 (+) False G1706711

Expression Profile