RNA id: TU1954189


Basic Information

Item Value
RNA id TU1954189
length 869
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G1706307
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10699791 ~ 10701318 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtagtgcactaaatagagaatagggtaccattttggaCGTAGTCTTTACAGTAGTAGTTGTGACTGGGCCCTATGCCATTTAAGGTGGGTAAAGTGAAAGTGGAGTTGAGGTAGAAGCCAGGGCTAGTggaggcagaagaggagaggtcaGGGGACTCTCTATCTCCAACACatggcagtagtactgtacacTGTGCTGCTGGGTTGAGGTAGAAGCCAGGGCTAGTggaggcagaagaggagaggtcaGAGGACTCTCTATCTCCAACACATGGCAGTAGTACTGTACGCTGTGCTGCTGGGTTTGACCAACAAGTGACTTCCTCATCACCAATGCTGGTGGTTCAAGCCCAGTTATTTCATCATCTGCTTAATGCTGCCCCAGTCTCTTTAATGAAACCACCTGTGGCTTTTAGTGCAGGTTTGTAGCTTGTTCTAAAGTAGCAGACAGTCTCACCACTCACAATGCAGACAAATAAATGTTTGGTTCCATCATGATTAGATTTCTTTGACATGGATGTTTTAGTTTTTTGGTTGATGTCCTTCTGGTCTTTTTGGAAACCTTACAAAATGTTGTAATGATAGATGAACAGTGTCCGTGTctttctcgttacctgacagtgttgtagacagtaaAACTGGTCCAATCTGTGTACAACAGAGTAGTTCATTAAGCCCCATATCCTTTTCATAGCAACTGTACAAAACCATTACCTGGGGTCAAACATGTTTAAAGCCGTAGAAAAGTGATTTTTAATAAACACTCGTCACCTTAACTACTGATTAGCTTACAGGGACTGCTAGATCTATCGCCTTCTGCTTAGCGCTTCAGTCGTCTCTCCTCGCTGTAAACATGTCTGCTACGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954184 lncRNA upstream 720 10695633 ~ 10699071 (+) True LOC110490805
TU1954294 lncRNA upstream 18974 10680076 ~ 10680817 (+) True G1706392
TU1954292 lncRNA upstream 20507 10678873 ~ 10679284 (+) True G1706391
TU1954239 lncRNA upstream 110099 10589105 ~ 10589692 (+) True G1706349
TU1954235 lncRNA upstream 111959 10585649 ~ 10587832 (+) True G1706346
TU1954343 lncRNA downstream 59413 10760566 ~ 10760967 (+) True G1706426
TU1954345 lncRNA downstream 61671 10762824 ~ 10763875 (+) True G1706428
TU1954346 lncRNA downstream 65259 10766412 ~ 10766700 (+) True G1706429
TU1954354 lncRNA downstream 81907 10783060 ~ 10784264 (+) False G1706436
TU1954356 lncRNA downstream 81907 10783060 ~ 10785280 (+) False G1706436
XM_036956827.1 mRNA upstream 1177 10522946 ~ 10698614 (+) False LOC110490805
XM_036956837.1 mRNA downstream 29397 10730550 ~ 10791811 (+) False LOC110514895
XM_036956835.1 mRNA downstream 29399 10730552 ~ 10791811 (+) False LOC110514895
XM_036956839.1 mRNA downstream 30261 10731414 ~ 10791811 (+) False LOC110514895
XM_036956834.1 mRNA downstream 30264 10731417 ~ 10791811 (+) False LOC110514895
XM_036956836.1 mRNA downstream 30767 10731920 ~ 10791811 (+) False LOC110514895
TU1953937 other upstream 564407 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 781772 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 946318 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1039651 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 1044073 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 408275 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 569576 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 696887 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 696887 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 696887 11398040 ~ 11399288 (+) False G1706711