RNA id: TU1954343


Basic Information

Item Value
RNA id TU1954343
length 352
lncRNA type intronic
GC content 0.49
exon number 2
gene id G1706426
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10760566 ~ 10760967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcttctagtcagctgagtaactaggctgttggacatgactctacaccctgtcttccagtcagctgagtaactaggctgttggacatgactctataccctgtcttccagtcagctgagtaactaggctgttggacatgactctataccctgtcttccagtcagctgagtaactaggctgttggacatgactctatacgctgtcttccagtcagctgagtaactaggctgttggacatgactctacaccctgtcttccagtcagctgagtaactaggctgttggacatgactctacaccctgtcttccagtcagctgagtaaccaggctgttggacatgactctataccctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954188 lncRNA upstream 59248 10699791 ~ 10701318 (+) False G1706307
TU1954185 lncRNA upstream 59413 10699791 ~ 10701153 (+) False G1706307
TU1954186 lncRNA upstream 59413 10699791 ~ 10701153 (+) False G1706307
TU1954189 lncRNA upstream 59413 10699791 ~ 10701153 (+) True G1706307
TU1954184 lncRNA upstream 61495 10695633 ~ 10699071 (+) True LOC110490805
TU1954345 lncRNA downstream 1857 10762824 ~ 10763875 (+) True G1706428
TU1954346 lncRNA downstream 5445 10766412 ~ 10766700 (+) True G1706429
TU1954354 lncRNA downstream 22093 10783060 ~ 10784264 (+) False G1706436
TU1954356 lncRNA downstream 22093 10783060 ~ 10785280 (+) False G1706436
TU1954358 lncRNA downstream 22093 10783060 ~ 10784605 (+) True G1706436
XM_036956827.1 mRNA upstream 61952 10522946 ~ 10698614 (+) False LOC110490805
XR_005038526.1 mRNA downstream 33802 10794769 ~ 10796991 (+) True LOC110510616
XM_036956853.1 mRNA downstream 139882 10900849 ~ 10902569 (+) True LOC118942874
XR_005038527.1 mRNA downstream 342213 11103180 ~ 11138302 (+) False LOC110531908
XM_036956859.1 mRNA downstream 342222 11103189 ~ 11138813 (+) False LOC110531908
XR_005038528.1 mRNA downstream 351245 11112212 ~ 11112675 (+) True LOC118942875
TU1953937 other upstream 625182 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 842547 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1007093 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1100426 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 1104848 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 348461 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 509762 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 637073 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 637073 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 637073 11398040 ~ 11399288 (+) False G1706711

Expression Profile