RNA id: TU1954346



Basic Information


Item Value
RNA id TU1954346
length 227
lncRNA type intronic
GC content 0.31
exon number 2
gene id G1706429
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10766412 ~ 10766700 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTAACGTTACTCTgatattactaccattactctgATATTAACATTACTCTGATATTACTAACATTACTCTGGTATTACTAACATTACTCTGGTATTAACATTACTCTggtattactaccattactctgATAGTAACGTTGCGCCAACATCACAAGTATTACTCTGATATTACTAACACTACTCTGATATTACTAACATTACTCTGATATTACTAACATTACTCTGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1954345 lncRNA upstream 2537 10762824 ~ 10763875 (+) True G1706428
TU1954343 lncRNA upstream 5445 10760566 ~ 10760967 (+) True G1706426
TU1954188 lncRNA upstream 65094 10699791 ~ 10701318 (+) False G1706307
TU1954185 lncRNA upstream 65259 10699791 ~ 10701153 (+) False G1706307
TU1954354 lncRNA downstream 16360 10783060 ~ 10784264 (+) False G1706436
TU1954356 lncRNA downstream 16360 10783060 ~ 10785280 (+) False G1706436
TU1954358 lncRNA downstream 16360 10783060 ~ 10784605 (+) True G1706436
TU1954359 lncRNA downstream 20942 10787642 ~ 10788399 (+) True G1706437
TU1954313 lncRNA downstream 25406 10792106 ~ 10793113 (+) True G1706404
XM_036956827.1 mRNA upstream 67798 10522946 ~ 10698614 (+) False LOC110490805
XR_005038526.1 mRNA downstream 28069 10794769 ~ 10796991 (+) True LOC110510616
XM_036956853.1 mRNA downstream 134149 10900849 ~ 10902569 (+) True LOC118942874
XR_005038527.1 mRNA downstream 336480 11103180 ~ 11138302 (+) False LOC110531908
XM_036956859.1 mRNA downstream 336489 11103189 ~ 11138813 (+) False LOC110531908
XR_005038528.1 mRNA downstream 345512 11112212 ~ 11112675 (+) True LOC118942875
TU1953937 other upstream 631028 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 848393 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1012939 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1106272 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 1110694 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 342728 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 504029 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 631340 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 631340 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 631340 11398040 ~ 11399288 (+) False G1706711

Expression Profile