RNA id: TU1954354


Basic Information

Item Value
RNA id TU1954354
length 1059
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1706436
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10783060 ~ 10785280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAgatctgctgtctcctctctgccagccagaCGCCAGGAGCCAGGGACAAACTGGAGCACACAGGagtagagtagtagagagtagatAGTAGAGTAGAAAGAGAAACcagagagatggataaagagactgagagatggacagagaaagagactgagggataaacagagcgagagacaggaaGTAAGGGTGATAGATACAAATAACCTATACTAGGAGACAGAGGTTTAATGGAGAACACAGGGAAGGATAGAAAGACTCCCTCATTTGCAgcagaaatagaaagagagcagagaacaggaccaagggagaggagagaacagagaacaggaccaagagaacagagaacaggaccaagagagaggagagaacagagaacaggaccaacagaacagagaacatgacaaaaagagaggagagaacaggaccaagagaacagagaacaggaccaagagagaggaaagaatagaggacaggaccaagagagaggagagaacagagaacaggaccaagagagaggagagaacaggaccaagagaacagagaacaggaccaagagagaggagagaacaggaccaagagaacagagaacaggaccaagagagaagagagaacaggaccaagagaacagagaacaggaccaagatagaggagagaacaggaccaagagaacagagaacaggaccaagagagaacagagaacaggaccaagagagaggagagaacagagaacaggaccaagagagaggagagaacagagaacaggacggagagacaggagagaacagagaataggaccaagagagaggagagaacagagaacaggaccaagagagaggagagaacagagaacaggaccaagagagaggagagaataggaccaagagaacagagaacaggaccaagagagaggagagaacaggaccaagagaacagagaacaggaccaagagagaggagagaacaggaccaagagagaggagagaacaggaccaagagagaggagagaacaggaccaagatagaggagagaacaggaccaagatagaggagagaacaggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954346 lncRNA upstream 16360 10766412 ~ 10766700 (+) True G1706429
TU1954345 lncRNA upstream 19185 10762824 ~ 10763875 (+) True G1706428
TU1954343 lncRNA upstream 22093 10760566 ~ 10760967 (+) True G1706426
TU1954188 lncRNA upstream 81742 10699791 ~ 10701318 (+) False G1706307
TU1954186 lncRNA upstream 81907 10699791 ~ 10701153 (+) False G1706307
TU1954359 lncRNA downstream 3378 10787642 ~ 10788399 (+) True G1706437
TU1954313 lncRNA downstream 7842 10792106 ~ 10793113 (+) True G1706404
TU1954369 lncRNA downstream 28505 10812769 ~ 10813262 (+) True G1706443
TU1954376 lncRNA downstream 32019 10816283 ~ 10817733 (+) True G1706447
TU1954435 lncRNA downstream 113754 10898018 ~ 10899271 (+) True G1706491
XM_036956827.1 mRNA upstream 84446 10522946 ~ 10698614 (+) False LOC110490805
XR_005038526.1 mRNA downstream 10505 10794769 ~ 10796991 (+) True LOC110510616
XM_036956853.1 mRNA downstream 116585 10900849 ~ 10902569 (+) True LOC118942874
XR_005038527.1 mRNA downstream 318916 11103180 ~ 11138302 (+) False LOC110531908
XM_036956859.1 mRNA downstream 318925 11103189 ~ 11138813 (+) False LOC110531908
XR_005038528.1 mRNA downstream 327948 11112212 ~ 11112675 (+) True LOC118942875
TU1953937 other upstream 647676 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 865041 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1029587 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1122920 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 1127342 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 325164 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 486465 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 613776 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 613776 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 613776 11398040 ~ 11399288 (+) False G1706711

Expression Profile