RNA id: TU1954359


Basic Information

Item Value
RNA id TU1954359
length 483
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1706437
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10787642 ~ 10788399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctgacagacagttagttactgtctctcctctgacagacagtcagttactgtctctcctctgacagacagttactgtctctcctctgacagacagttagttactgtctctcctctgacagacagttagttactgtctctcctctgacagacagttagttactgtctctcctctgacagacagttagttactgtctctcctctgacagacagttagttactgtctctcctctgatatacagttagttactgtctctcctctgacagacagtcagttactgtctctcctctgacagacagttagttactgtctctcctctgacagacagttagttactgtCCTCTGAtatacagttagttagttagttagttagtgtctcctctgacagacagttagttactgtctctcctctgacagacagtcagttactgtctctcctctgacagacagttagttactgtCCTCTGATATACAGTTAGTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954356 lncRNA upstream 2362 10783060 ~ 10785280 (+) False G1706436
TU1954358 lncRNA upstream 3037 10783060 ~ 10784605 (+) True G1706436
TU1954354 lncRNA upstream 3378 10783060 ~ 10784264 (+) False G1706436
TU1954346 lncRNA upstream 20942 10766412 ~ 10766700 (+) True G1706429
TU1954345 lncRNA upstream 23767 10762824 ~ 10763875 (+) True G1706428
TU1954313 lncRNA downstream 3707 10792106 ~ 10793113 (+) True G1706404
TU1954369 lncRNA downstream 24370 10812769 ~ 10813262 (+) True G1706443
TU1954376 lncRNA downstream 27884 10816283 ~ 10817733 (+) True G1706447
TU1954435 lncRNA downstream 109619 10898018 ~ 10899271 (+) True G1706491
TU1954387 lncRNA downstream 115456 10903855 ~ 10905995 (+) True G1706454
XM_036956827.1 mRNA upstream 89028 10522946 ~ 10698614 (+) False LOC110490805
XR_005038526.1 mRNA downstream 6370 10794769 ~ 10796991 (+) True LOC110510616
XM_036956853.1 mRNA downstream 112450 10900849 ~ 10902569 (+) True LOC118942874
XR_005038527.1 mRNA downstream 314781 11103180 ~ 11138302 (+) False LOC110531908
XM_036956859.1 mRNA downstream 314790 11103189 ~ 11138813 (+) False LOC110531908
XR_005038528.1 mRNA downstream 323813 11112212 ~ 11112675 (+) True LOC118942875
TU1953937 other upstream 652258 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 869623 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1034169 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1127502 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 1131924 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 321029 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 482330 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 609641 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 609641 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 609641 11398040 ~ 11399288 (+) False G1706711

Expression Profile