RNA id: TU1954313


Basic Information

Item Value
RNA id TU1954313
length 1008
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1706404
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10792106 ~ 10793113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTATCGTGTAGGCCTGGGTGATATTTCTGCCTCAGTGATCTGTGGCTGGGCCTTTGTTTCTGCTTCAACATCGCCCCCATGTGGACGGGATGTGCAAGTGCCTGCTGCGCCAGAGTCAAATCTTAATGTCAAATACACAAAGAGATGTGTTTTGGAATGTGAAGGGATCTGGTGACTCAGTGGTAAGGATCTCACCCCATACGCATGGGGTCGTAGGTATGTTTCCTGACAAAACCTGGAGGACTGTGACAACTGCTGGGGGTTTCCCCTCCTGTGAACAGCAGCAGTTATGGGGGAAAACCTCTGGGAAAAGTAGACCTGTAGGTTTTTAAAAAAGATCCATTTGAAAATTAAGGGTCTACTTTCTCAGAGGTTTATGACCACAACACATCCTGATCCAGAGCTGTGACTTGAACCTACAACCCTGAACATATGGGGTGAGATCTTTACACCAGAGCCCCAGACTCCTTCACACCTCTTAACTGTTTTCTTTGTCATTTTCACGTTGAGAATTGCTGACATTACCAATAACTCAAACCCAAGATTTGAACCCATAACCTCTATGGTTGAAGGTAGGAAGTGAACCTCAAAGCCACAGACTCTCACACGTCTAGCTCATCTTACGACGATCTAAATAGTTAAACACCATGCCTTCTCTCAACTAATGATCTAGTAAGATCGTTTGTTTTCTAAACGACCTTGTGTGACACAGCCATGTACAATTTATGGAGTTGGTTTTATGATTTTCTAAAGACAATGACACGCTCAAATGTATTGCCGTTAATTATTGTAGCATTTGATGGACAAGTCATTCTGATTTGATCTCATGATTATGTCAAACGGAACCTCAACTCAAACTTGACATTTTAATGCAGACTTTTTGTTGGTCTGTTCAAGATTCTGGGCTTGATTCAATCCGTAGTGCTGAAGATCTGCTGTACAGCGTGATTCAAATTGTCACCTGaccctttggaaagtattcagaccccttgactttttccagatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954359 lncRNA upstream 3707 10787642 ~ 10788399 (+) True G1706437
TU1954356 lncRNA upstream 6826 10783060 ~ 10785280 (+) False G1706436
TU1954358 lncRNA upstream 7501 10783060 ~ 10784605 (+) True G1706436
TU1954354 lncRNA upstream 7842 10783060 ~ 10784264 (+) False G1706436
TU1954346 lncRNA upstream 25406 10766412 ~ 10766700 (+) True G1706429
TU1954369 lncRNA downstream 19656 10812769 ~ 10813262 (+) True G1706443
TU1954376 lncRNA downstream 23170 10816283 ~ 10817733 (+) True G1706447
TU1954435 lncRNA downstream 104905 10898018 ~ 10899271 (+) True G1706491
TU1954387 lncRNA downstream 110742 10903855 ~ 10905995 (+) True G1706454
TU1954440 lncRNA downstream 118900 10912013 ~ 10926463 (+) True G1706496
XM_036956837.1 mRNA upstream 295 10730550 ~ 10791811 (+) False LOC110514895
XM_036956835.1 mRNA upstream 295 10730552 ~ 10791811 (+) False LOC110514895
XM_036956839.1 mRNA upstream 295 10731414 ~ 10791811 (+) False LOC110514895
XM_036956834.1 mRNA upstream 295 10731417 ~ 10791811 (+) False LOC110514895
XM_036956836.1 mRNA upstream 295 10731920 ~ 10791811 (+) False LOC110514895
XR_005038526.1 mRNA downstream 1656 10794769 ~ 10796991 (+) True LOC110510616
XM_036956853.1 mRNA downstream 107736 10900849 ~ 10902569 (+) True LOC118942874
XR_005038527.1 mRNA downstream 310067 11103180 ~ 11138302 (+) False LOC110531908
XM_036956859.1 mRNA downstream 310076 11103189 ~ 11138813 (+) False LOC110531908
XR_005038528.1 mRNA downstream 319099 11112212 ~ 11112675 (+) True LOC118942875
TU1953937 other upstream 656722 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 874087 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1038633 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1131966 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 1136388 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 316315 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 477616 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 604927 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 604927 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 604927 11398040 ~ 11399288 (+) False G1706711

Expression Profile