RNA id: TU1954369


Basic Information

Item Value
RNA id TU1954369
length 230
lncRNA type intronic
GC content 0.55
exon number 2
gene id G1706443
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10812769 ~ 10813262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgagggccctcggagtgtggtgtcaggaaaataacctctctctcaatgtcagcaaaacaaaagagatgatcgtggacttcaggaaacagcaaagggagcaccaccctatccacatcgacgggacagcagtggagaaggtggaaagtctggtacggcaactgcaccgcccacaaacgcagggctctccagagggtagtgaggtctgcacaacgcatcaccgggggcaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954313 lncRNA upstream 19656 10792106 ~ 10793113 (+) True G1706404
TU1954359 lncRNA upstream 24370 10787642 ~ 10788399 (+) True G1706437
TU1954356 lncRNA upstream 27489 10783060 ~ 10785280 (+) False G1706436
TU1954358 lncRNA upstream 28164 10783060 ~ 10784605 (+) True G1706436
TU1954354 lncRNA upstream 28505 10783060 ~ 10784264 (+) False G1706436
TU1954376 lncRNA downstream 3021 10816283 ~ 10817733 (+) True G1706447
TU1954435 lncRNA downstream 84756 10898018 ~ 10899271 (+) True G1706491
TU1954387 lncRNA downstream 90593 10903855 ~ 10905995 (+) True G1706454
TU1954440 lncRNA downstream 98751 10912013 ~ 10926463 (+) True G1706496
TU1954448 lncRNA downstream 119481 10932743 ~ 10933825 (+) True G1706503
XR_005038526.1 mRNA upstream 15778 10794769 ~ 10796991 (+) True LOC110510616
XM_036956839.1 mRNA upstream 20958 10731414 ~ 10791811 (+) False LOC110514895
XM_036956853.1 mRNA downstream 87587 10900849 ~ 10902569 (+) True LOC118942874
XR_005038527.1 mRNA downstream 289918 11103180 ~ 11138302 (+) False LOC110531908
XM_036956859.1 mRNA downstream 289927 11103189 ~ 11138813 (+) False LOC110531908
XR_005038528.1 mRNA downstream 298950 11112212 ~ 11112675 (+) True LOC118942875
XM_036956863.1 mRNA downstream 381283 11194545 ~ 11200949 (+) True LOC118942876
TU1953937 other upstream 677385 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 894750 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1059296 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1152629 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 1157051 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 296166 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 457467 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 584778 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 584778 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 584778 11398040 ~ 11399288 (+) False G1706711

Expression Profile