RNA id: TU1954387


Basic Information

Item Value
RNA id TU1954387
length 2111
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G1706454
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10903855 ~ 10905995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCGTAACGTTAACCTTTATTAAGAGCTCCATATTTATGTAGAAATCACACTACAAGTTTTTCTCCTTACAAAAAGTTATTTACACTACAGTGCTGACAATTAAAATCGAACAGAAAATTATGAAAACTAAAAAGCTTCCTTGATATAAATAAGCCTCTGAGGGGGAACAAAAAAAAGCCTGGAGTAAATCCTTTAAAATAATGTCTCATCAtcttacaaaaaatatatatatgttaatGTCAGCTCTAATAATAATCCATCTATAACCTAAAACTAAAATATATTATTTAAGAACCTGTATGTTTGTCAGACCTGCAGAGTACCAGTGCTTCTGGCCCTAAGTGCTTTGACAGTTCACAGATATTAGCCTGagtcccagatcagtttatgcGTTCTTGCCAAGCCAACTCCTACTGTACGGTCAACAAtgagacaagacaatacaaactgatctgggaccaggctacacaGTTATGGACAGGCACTGAGGAATGTTACATTTGCAATGTATTCATTCGGTAACAGAACAGAGCAAGTGTGCATCCTAAAGGGTACCCTATgtccaatatagtgcactacttttgatcagatctctctcctatgggccctggtcacaaAGTAgatccctatatagggaatagggcaccatttagGATGCAAACCCAACAGAGCTTTACGTGTCCCTTAGAATACATCACACACCGTGCTGATATCATGGTTTAAAGTCTGTCTTCTCCTTCCTTTAGATGGGATTAAAACAGAACCCCGAAGAGCCATTTTAAAACACTATGTACAAAGATCAGTAGAAACAGTCTTTCTGGTGCTGCTCATGCAGGTGGTGtttaaaggagagggaggagcggTGCGGGGGGCCAGGAGGCCGTGTTTCCGGGGGGGTGACTGGGGCCTTTGTGTAAAGAGAAGTGTCTTTGTCCTGGGGTTTGTCCGGTCTGGGCTGGGGTTGGGCCCGGACCTGGGGTGTAGGGGTCCTGCTCTCTGTGTGGCTGGAGGCCAGGCTTGAAGAAGATAGAAGGGGTGCAGAGGAGGGCGTCAAAAAGGGGATAGGGGTGTGGGTAAGGACAGGGGTATGGGTAAGGGTATGGGTAAGGGTGTGGGTAAGGATAGGGGTGTGGGTAAGGATAGGGATATGGGTAGGGGTGTGGGTAAGGATAGGGGTGTGGTTAAGGACAGGGGTGTGGGTATGGGTAGGGGTATGGGTAGGGGTGTGGGtaagggtaggggtaggggtgtGGGTAAGGATAGGGATATGGGTAGGGGTGTGGGTAAGGACAGGGGTGTGGCAGGGTTTGCgtgagggagagggacagggggtacGAGTGGAAGCCGGGCTGGGTTTGAAGGGGGGAGAGGGACTGGGGGTACGAGTGGAAGCCGGGCTGGGTTTGAAGGGGGGAGAGGGACTGGGGGTACGAGTGGAAGCCGGGCTGGGTTTGAAGGGGGGAGAGTGTGTAGAAGTGGGACTAGATTTGGGAGAGGGGGTACAAGAGGATGACGGACTGGGTTTGGGAGAGGATgggggggtggaggtgggggagGGTTTGAGTGAGGAAGACAAGGAAGAGTGTGTGGTAGTGGTTTGATATAATTctgagtgatggtggtggtggtagtagtggggatgatggtgatgtgattTGGGCTTGGTGTCCTGGAAAGAGGATTTGGAGGGAGTTAGGGGGGTGATGGGAGTTGGTAGGGGGGCGATGGGTGAGGTGACAGAGGGCTTGGGCAGCCTTATATCCGCAGGTTGAGGTTCCACTTTGACCTCCGGGTGGgcagtgtctctgtctgtgggGGGTTTGGGGTCCGTGAGAGGAGCTGTGGTCCCTCCCATCAAGGCATCCCCAAACTGCTCCTGTTTGACTCGTAGCGTCGACACGtccaccttcctctcctcctcggCCGGAGGCTCTTGGTGGTATTGTTTTAAGCGGATGTGCCATGCCAGGCTGCAGACAGCAGAGACCGTCTTGAACTGATGAACCACACTACGAGGGATGTAGTAGATGTCGTTGTCGTACAGCTGGATACGGGCGTAGCGGATCCCCTCGCGTCTCAGCTGGTTCAGCTTAGCGTCGTCCACCCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954435 lncRNA upstream 4584 10898018 ~ 10899271 (+) True G1706491
TU1954376 lncRNA upstream 86122 10816283 ~ 10817733 (+) True G1706447
TU1954369 lncRNA upstream 90593 10812769 ~ 10813262 (+) True G1706443
TU1954313 lncRNA upstream 110742 10792106 ~ 10793113 (+) True G1706404
TU1954359 lncRNA upstream 115456 10787642 ~ 10788399 (+) True G1706437
TU1954440 lncRNA downstream 6018 10912013 ~ 10926463 (+) True G1706496
TU1954448 lncRNA downstream 26748 10932743 ~ 10933825 (+) True G1706503
TU1954466 lncRNA downstream 74005 10980000 ~ 10980452 (+) True G1706521
TU1954487 lncRNA downstream 115203 11021198 ~ 11021877 (+) True G1706534
TU1954494 lncRNA downstream 121803 11027798 ~ 11028422 (+) True G1706541
XM_036956853.1 mRNA upstream 1286 10900849 ~ 10902569 (+) True LOC118942874
XR_005038526.1 mRNA upstream 106864 10794769 ~ 10796991 (+) True LOC110510616
XM_036956834.1 mRNA upstream 112044 10731417 ~ 10791811 (+) False LOC110514895
XR_005038527.1 mRNA downstream 197185 11103180 ~ 11138302 (+) False LOC110531908
XM_036956859.1 mRNA downstream 197194 11103189 ~ 11138813 (+) False LOC110531908
XR_005038528.1 mRNA downstream 206217 11112212 ~ 11112675 (+) True LOC118942875
XM_036956863.1 mRNA downstream 288550 11194545 ~ 11200949 (+) True LOC118942876
XM_036956867.1 mRNA downstream 405195 11311190 ~ 11316722 (+) True LOC110499797
TU1953937 other upstream 768471 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 985836 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1150382 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1243715 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 1248137 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 203433 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 364734 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 492045 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 492045 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 492045 11398040 ~ 11399288 (+) False G1706711

Expression Profile