RNA id: TU1954497


Basic Information

Item Value
RNA id TU1954497
length 516
lncRNA type intronic
GC content 0.41
exon number 3
gene id G1706543
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11036421 ~ 11037362 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggtggtgctgtaatgtaatgttatacgtggtggtgctgtaatgtaatgttatacgtggtggtgctgtaatgtaatgttatacgtggtggtgctgtaatgttatacgtggtggtgtTGTAATGTTATATGTGGTGGTGCAgtaatgtaatgttatacgtggtggtgctgtaatgtaatgttatacgtggtggtgctgtaatgtaatgttatacgtggtggtgctgtaatgtaatgttatacgtggtggtgctgtaatgtaatgttatacgtggtggtgctgtaatgtaatgttatacgtggtggtgctgtaatgttagacgtggtggtgctgtaatgttatacgtggtggtgctgtaatgttatacgtggtggtgcagTAATGTTAgacgtggtggtgctgtaatgttatacgtggtggtgcagtaatgtaatgttatacgcggtggtgctgtaatgttatacgtggtggtgcagtaatgtaatgttatacgtggtggtgctgtaatgttagacgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954494 lncRNA upstream 7999 11027798 ~ 11028422 (+) True G1706541
TU1954487 lncRNA upstream 14544 11021198 ~ 11021877 (+) True G1706534
TU1954466 lncRNA upstream 55969 10980000 ~ 10980452 (+) True G1706521
TU1954448 lncRNA upstream 102596 10932743 ~ 10933825 (+) True G1706503
TU1954440 lncRNA upstream 109958 10912013 ~ 10926463 (+) True G1706496
TU1954500 lncRNA downstream 779 11038141 ~ 11038813 (+) True G1706544
TU1954541 lncRNA downstream 65991 11103353 ~ 11104287 (+) False LOC110531908
TU1954548 lncRNA downstream 73459 11110821 ~ 11113348 (+) True G1706588
TU1954549 lncRNA downstream 76312 11113674 ~ 11114465 (+) True G1706589
TU1954544 lncRNA downstream 79454 11116816 ~ 11122980 (+) True LOC110531908
XM_036956853.1 mRNA upstream 133852 10900849 ~ 10902569 (+) True LOC118942874
XR_005038526.1 mRNA upstream 239430 10794769 ~ 10796991 (+) True LOC110510616
XM_036956836.1 mRNA upstream 244610 10731920 ~ 10791811 (+) False LOC110514895
XR_005038527.1 mRNA downstream 65818 11103180 ~ 11138302 (+) False LOC110531908
XM_036956859.1 mRNA downstream 65827 11103189 ~ 11138813 (+) False LOC110531908
XR_005038528.1 mRNA downstream 74850 11112212 ~ 11112675 (+) True LOC118942875
XM_036956863.1 mRNA downstream 157183 11194545 ~ 11200949 (+) True LOC118942876
XM_036956867.1 mRNA downstream 273828 11311190 ~ 11316722 (+) True LOC110499797
TU1953937 other upstream 901037 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 1118402 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1282948 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1376281 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 1380703 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 72066 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 233367 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 360678 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 360678 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 360678 11398040 ~ 11399288 (+) False G1706711

Expression Profile