RNA id: TU1954548


Basic Information

Item Value
RNA id TU1954548
length 257
lncRNA type read_through
GC content 0.50
exon number 3
gene id G1706588
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11110821 ~ 11113348 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatggccccagtataactgttacaggtgttgatgatggccccagtgtaactgtgttgatgatggcctcagtgtaactgtgttgatgatggccccagtgtaactgttacaggtgttgatgatggccccagtgtaactgtgttgatgatggccccagtgtaactgtgttgatgatggccccagtgtaaccttgttgatgatggccccagtgtaactgtgttgatgatggccccagtgtaactgtgttgatgatggcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954541 lncRNA upstream 6534 11103353 ~ 11104287 (+) False LOC110531908
TU1954501 lncRNA upstream 72008 11036253 ~ 11038813 (+) False G1706544
TU1954500 lncRNA upstream 72008 11038141 ~ 11038813 (+) True G1706544
TU1954497 lncRNA upstream 73459 11036421 ~ 11037362 (+) True G1706543
TU1954494 lncRNA upstream 82399 11027798 ~ 11028422 (+) True G1706541
TU1954549 lncRNA downstream 326 11113674 ~ 11114465 (+) True G1706589
TU1954544 lncRNA downstream 3468 11116816 ~ 11122980 (+) True LOC110531908
TU1954550 lncRNA downstream 4591 11117939 ~ 11118387 (+) True G1706590
TU1954566 lncRNA downstream 56395 11169743 ~ 11170016 (+) True G1706605
TU1954584 lncRNA downstream 71931 11185279 ~ 11186324 (+) True G1706615
XM_036956853.1 mRNA upstream 208252 10900849 ~ 10902569 (+) True LOC118942874
XR_005038526.1 mRNA upstream 313830 10794769 ~ 10796991 (+) True LOC110510616
XM_036956836.1 mRNA upstream 319010 10731920 ~ 10791811 (+) False LOC110514895
XM_036956863.1 mRNA downstream 81197 11194545 ~ 11200949 (+) True LOC118942876
XM_036956867.1 mRNA downstream 197842 11311190 ~ 11316722 (+) True LOC110499797
XM_036956866.1 mRNA downstream 228288 11341636 ~ 11354995 (+) True LOC110499792
XM_036956871.1 mRNA downstream 242650 11355998 ~ 11359023 (+) True LOC110518478
XM_021564084.2 mRNA downstream 297103 11410451 ~ 11414636 (+) False LOC110490628
TU1953937 other upstream 975437 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 1192802 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1357348 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1450681 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 1455103 9655298 ~ 9655718 (+) True G1705918
TU1954621 other downstream 157381 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 284692 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 284692 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 284692 11398040 ~ 11399288 (+) False G1706711
TU1954701 other downstream 284692 11398040 ~ 11399228 (+) False G1706711

Expression Profile