RNA id: TU1954549


Basic Information

Item Value
RNA id TU1954549
length 247
lncRNA type intronic
GC content 0.49
exon number 2
gene id G1706589
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11113674 ~ 11114465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATGGCCCCAGtgtaactgtgttgatgatggccccagtgtaactgtgttgatgatggccccagtgtaactgtgttgatgatggccccagtgtaactgtgttacaggtgttgatgatgaccccagtgtaactgtgttgatgatggccccagtgtaactgtgttacaggtgttgatggccccagtgtaactgtgttacaggtgttgatgatgaccccagtgtaactgtgttgatgatggccccagtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954548 lncRNA upstream 326 11110821 ~ 11113348 (+) True G1706588
TU1954541 lncRNA upstream 9387 11103353 ~ 11104287 (+) False LOC110531908
TU1954501 lncRNA upstream 74861 11036253 ~ 11038813 (+) False G1706544
TU1954500 lncRNA upstream 74861 11038141 ~ 11038813 (+) True G1706544
TU1954497 lncRNA upstream 76312 11036421 ~ 11037362 (+) True G1706543
TU1954544 lncRNA downstream 2351 11116816 ~ 11122980 (+) True LOC110531908
TU1954550 lncRNA downstream 3474 11117939 ~ 11118387 (+) True G1706590
TU1954566 lncRNA downstream 55278 11169743 ~ 11170016 (+) True G1706605
TU1954584 lncRNA downstream 70814 11185279 ~ 11186324 (+) True G1706615
TU1954593 lncRNA downstream 102543 11217008 ~ 11217387 (+) True G1706624
XR_005038528.1 mRNA upstream 999 11112212 ~ 11112675 (+) True LOC118942875
XM_036956853.1 mRNA upstream 211105 10900849 ~ 10902569 (+) True LOC118942874
XR_005038526.1 mRNA upstream 316683 10794769 ~ 10796991 (+) True LOC110510616
XM_036956836.1 mRNA upstream 321863 10731920 ~ 10791811 (+) False LOC110514895
XM_036956863.1 mRNA downstream 80080 11194545 ~ 11200949 (+) True LOC118942876
XM_036956867.1 mRNA downstream 196725 11311190 ~ 11316722 (+) True LOC110499797
XM_036956866.1 mRNA downstream 227171 11341636 ~ 11354995 (+) True LOC110499792
XM_036956871.1 mRNA downstream 241533 11355998 ~ 11359023 (+) True LOC110518478
XM_021564084.2 mRNA downstream 295986 11410451 ~ 11414636 (+) False LOC110490628
TU1953937 other upstream 978290 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 1195655 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1360201 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1453534 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 1457956 9655298 ~ 9655718 (+) True G1705918
TU1954621 other downstream 156264 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 283575 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 283575 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 283575 11398040 ~ 11399288 (+) False G1706711
TU1954701 other downstream 283575 11398040 ~ 11399228 (+) False G1706711

Expression Profile