RNA id: TU1954550


Basic Information

Item Value
RNA id TU1954550
length 395
lncRNA type intronic
GC content 0.45
exon number 2
gene id G1706590
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11117939 ~ 11118387 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taccatggtctctctctctgatcccaaGCTTTACACTGCAGACTGCAGTAGGACAGTAtggaaccatggtctctctctctgatcccaaGCTTTACACTGCAGCTAGCAGTAGGACAGTATGgtaccatggtctctctctctgatcccaaGCTTTACACTGCAGCTAGCAGTAGGACAGTATGAAAACATTCATCATTTCCAATTCCTGACATATTCTCTTATAGAACCACTTCAACAGGTAGCCTAGAGTttaagagcgttgggtcagtaaccgaaaggtcgctggctCGAATCCCTGAGACGAATCTGTtaatgttcccttgagcaaggcaatgaaccctaattgctcttgtatgtgctaaatgactaacatggaCATGTAAAATGTAGTACAG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954549 lncRNA upstream 3474 11113674 ~ 11114465 (+) True G1706589
TU1954548 lncRNA upstream 4591 11110821 ~ 11113348 (+) True G1706588
TU1954541 lncRNA upstream 13652 11103353 ~ 11104287 (+) False LOC110531908
TU1954500 lncRNA upstream 79126 11038141 ~ 11038813 (+) True G1706544
TU1954497 lncRNA upstream 80577 11036421 ~ 11037362 (+) True G1706543
TU1954566 lncRNA downstream 51356 11169743 ~ 11170016 (+) True G1706605
TU1954584 lncRNA downstream 66892 11185279 ~ 11186324 (+) True G1706615
TU1954593 lncRNA downstream 98621 11217008 ~ 11217387 (+) True G1706624
TU1954618 lncRNA downstream 142670 11261057 ~ 11261272 (+) True G1706649
TU1954622 lncRNA downstream 156559 11274946 ~ 11275779 (+) True G1706653
XR_005038528.1 mRNA upstream 5264 11112212 ~ 11112675 (+) True LOC118942875
XM_036956853.1 mRNA upstream 215370 10900849 ~ 10902569 (+) True LOC118942874
XR_005038526.1 mRNA upstream 320948 10794769 ~ 10796991 (+) True LOC110510616
XM_036956833.1 mRNA upstream 326128 10748053 ~ 10791811 (+) False LOC110514895
XM_036956863.1 mRNA downstream 76158 11194545 ~ 11200949 (+) True LOC118942876
XM_036956867.1 mRNA downstream 192803 11311190 ~ 11316722 (+) True LOC110499797
XM_036956866.1 mRNA downstream 223249 11341636 ~ 11354995 (+) True LOC110499792
XM_036956871.1 mRNA downstream 237611 11355998 ~ 11359023 (+) True LOC110518478
XM_021564084.2 mRNA downstream 292064 11410451 ~ 11414636 (+) False LOC110490628
TU1954537 other upstream 1514 11109428 ~ 11116425 (+) False LOC110531908
TU1953937 other upstream 982555 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 1199920 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1364466 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1457799 9659331 ~ 9660140 (+) True G1705920
TU1954621 other downstream 152342 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 279653 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 279653 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 279653 11398040 ~ 11399288 (+) False G1706711
TU1954701 other downstream 279653 11398040 ~ 11399228 (+) False G1706711

Expression Profile