RNA id: TU1954566


Basic Information

Item Value
RNA id TU1954566
length 209
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1706605
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11169743 ~ 11170016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttaggagtatgggttaaggtaagggttaaggtgttagggttaggggttaaggttagggttacaggttaaggttaggagtatgggttaaggtaagggttaaggtgttagggttaggggttaaggttagggttacaggttaaggttaggagtatgggttaaggtaagggttaaggtgttagggttaggggttaaggttagggttacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954544 lncRNA upstream 46763 11116816 ~ 11122980 (+) True LOC110531908
TU1954550 lncRNA upstream 51356 11117939 ~ 11118387 (+) True G1706590
TU1954549 lncRNA upstream 55278 11113674 ~ 11114465 (+) True G1706589
TU1954548 lncRNA upstream 56395 11110821 ~ 11113348 (+) True G1706588
TU1954541 lncRNA upstream 65456 11103353 ~ 11104287 (+) False LOC110531908
TU1954584 lncRNA downstream 15263 11185279 ~ 11186324 (+) True G1706615
TU1954593 lncRNA downstream 46992 11217008 ~ 11217387 (+) True G1706624
TU1954618 lncRNA downstream 91041 11261057 ~ 11261272 (+) True G1706649
TU1954622 lncRNA downstream 104930 11274946 ~ 11275779 (+) True G1706653
TU1954623 lncRNA downstream 106034 11276050 ~ 11276592 (+) True G1706654
XM_036956859.1 mRNA upstream 30930 11103189 ~ 11138813 (+) False LOC110531908
XR_005038527.1 mRNA upstream 31441 11103180 ~ 11138302 (+) False LOC110531908
XR_005038528.1 mRNA upstream 57068 11112212 ~ 11112675 (+) True LOC118942875
XM_036956853.1 mRNA upstream 267174 10900849 ~ 10902569 (+) True LOC118942874
XR_005038526.1 mRNA upstream 372752 10794769 ~ 10796991 (+) True LOC110510616
XM_036956863.1 mRNA downstream 24529 11194545 ~ 11200949 (+) True LOC118942876
XM_036956867.1 mRNA downstream 141174 11311190 ~ 11316722 (+) True LOC110499797
XM_036956866.1 mRNA downstream 171620 11341636 ~ 11354995 (+) True LOC110499792
XM_036956871.1 mRNA downstream 185982 11355998 ~ 11359023 (+) True LOC110518478
XM_021564084.2 mRNA downstream 240435 11410451 ~ 11414636 (+) False LOC110490628
TU1954537 other upstream 53318 11109428 ~ 11116425 (+) False LOC110531908
TU1953937 other upstream 1034359 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 1251724 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1416270 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 1509603 9659331 ~ 9660140 (+) True G1705920
TU1954621 other downstream 100713 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 228024 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 228024 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 228024 11398040 ~ 11399288 (+) False G1706711
TU1954701 other downstream 228024 11398040 ~ 11399228 (+) False G1706711

Expression Profile