RNA id: TU1954622


Basic Information

Item Value
RNA id TU1954622
length 834
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G1706653
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11274946 ~ 11275779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggggtTGAGAAACTGCGCTACACCACTACATAGGTCAATAGTACctaaagtcacacacacaaaaggaGTGTGTGTTCTGCCTGTAACAGTCTCAGCTTCCCCTATTCCAGGGTTTCCCAGGTGGCGGCCCGCGGGTGggttttatttattatatatatatatttctttgtgGAATTGTTATTGTTGGACATTAAAGATTGTtgaaacaccaggaaatcagctccaagtgattttaattgaagaaatctgttcccaagtattcccaggCATAATGGAGAGAAGTGTGAACGTATACAAATGTgaacaaggtttgaaatgattatgtttcgTCAAACTATATCTGTTTGGGCATCTTGCGGTCAATTTGTGGTTTACAAATGAATTGTAATTGTGTTCCGGCCCCTCAACCATCCGTTCCAGAAAAGATcgtcccgcggctgaatctagttgatgatccctgccttATTCTGTCCTCTTCCAGGTAACACAGTGGCACACGCAGGTATCCATTCTTACACTCGCTCTGTtgtccttcctcctctctatGTCAGCAACACGTCTTCCTGTCTGTGATCACCGCTGGCCCGTTGATTGGTCGTGAGTTGGCTCGGAGCAGGACGCGGGGCGAGTCATTGTTGCTAGGGGCCTGTTGCCGGACGGCAGTGCCGTTGCGCGCCAGCAGCTCGCGGGCCATCATCATGAAGGCATCGTCCACATTCTGGGCCTCCTTAGCTGAGGTCTCTAACGCTGCCAGGATGCCTCTCTCCTCAGCCATACAGCATGCCTCCTGGAACAACACCTGACGCTCAGACTCCAGGTCAGACTTGTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954618 lncRNA upstream 13674 11261057 ~ 11261272 (+) True G1706649
TU1954593 lncRNA upstream 57559 11217008 ~ 11217387 (+) True G1706624
TU1954584 lncRNA upstream 88622 11185279 ~ 11186324 (+) True G1706615
TU1954566 lncRNA upstream 104930 11169743 ~ 11170016 (+) True G1706605
TU1954544 lncRNA upstream 151966 11116816 ~ 11122980 (+) True LOC110531908
TU1954623 lncRNA downstream 271 11276050 ~ 11276592 (+) True G1706654
TU1954624 lncRNA downstream 921 11276700 ~ 11277472 (+) True G1706655
TU1954626 lncRNA downstream 7417 11283196 ~ 11284120 (+) True G1706657
TU1954658 lncRNA downstream 23085 11298864 ~ 11335045 (+) False G1706678
TU1954659 lncRNA downstream 23085 11298864 ~ 11303165 (+) False G1706678
XM_036956863.1 mRNA upstream 73997 11194545 ~ 11200949 (+) True LOC118942876
XM_036956859.1 mRNA upstream 136133 11103189 ~ 11138813 (+) False LOC110531908
XR_005038527.1 mRNA upstream 136644 11103180 ~ 11138302 (+) False LOC110531908
XR_005038528.1 mRNA upstream 162271 11112212 ~ 11112675 (+) True LOC118942875
XM_036956853.1 mRNA upstream 372377 10900849 ~ 10902569 (+) True LOC118942874
XM_036956867.1 mRNA downstream 35411 11311190 ~ 11316722 (+) True LOC110499797
XM_036956866.1 mRNA downstream 65857 11341636 ~ 11354995 (+) True LOC110499792
XM_036956871.1 mRNA downstream 80219 11355998 ~ 11359023 (+) True LOC110518478
XM_021564084.2 mRNA downstream 134672 11410451 ~ 11414636 (+) False LOC110490628
XM_021564085.2 mRNA downstream 134672 11410451 ~ 11414640 (+) True LOC110490628
TU1954621 other upstream 2473 11270729 ~ 11272473 (+) True G1706652
TU1954537 other upstream 158521 11109428 ~ 11116425 (+) False LOC110531908
TU1953937 other upstream 1139562 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 1356927 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1521473 9748185 ~ 9753473 (+) True G1706013
TU1954697 other downstream 122261 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 122261 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 122261 11398040 ~ 11399288 (+) False G1706711
TU1954701 other downstream 122261 11398040 ~ 11399228 (+) False G1706711
TU1954702 other downstream 122261 11398040 ~ 11399228 (+) False G1706711

Expression Profile