RNA id: TU1954663


Basic Information

Item Value
RNA id TU1954663
length 862
lncRNA type intronic
GC content 0.33
exon number 2
gene id G1706678
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11298864 ~ 11335045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cattacaatgtacagggtattattctgagaattctactgataatacacagtaaaggttgatacaatcattacaatgtacagggtattatactgaGAATTCTACagataatgcacagtaaaggttgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattatactgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattatactgggaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacaatcattacaatgtacagggtattatactgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacagtcattacaatgtacagggtattattctgagaattctactgataatgcacagtaaaggttgatacagtCATTTGTTTCAGAGGAGTTGAGGGATCCATTTCTTCATAACTTCAATAATGCATTTGACCAACGCCATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954626 lncRNA upstream 16996 11283196 ~ 11284120 (+) True G1706657
TU1954624 lncRNA upstream 23644 11276700 ~ 11277472 (+) True G1706655
TU1954623 lncRNA upstream 24524 11276050 ~ 11276592 (+) True G1706654
TU1954622 lncRNA upstream 25337 11274946 ~ 11275779 (+) True G1706653
TU1954618 lncRNA upstream 39844 11261057 ~ 11261272 (+) True G1706649
TU1954669 lncRNA downstream 13958 11317123 ~ 11317792 (+) True G1706684
TU1954679 lncRNA downstream 23071 11326236 ~ 11326720 (+) True G1706694
TU1954656 lncRNA downstream 30991 11334156 ~ 11335045 (+) True G1706678
TU1954639 lncRNA downstream 59991 11363156 ~ 11433934 (+) False G1706665
TU1954640 lncRNA downstream 59991 11363156 ~ 11377111 (+) False G1706665
XM_036956863.1 mRNA upstream 100167 11194545 ~ 11200949 (+) True LOC118942876
XM_036956859.1 mRNA upstream 162303 11103189 ~ 11138813 (+) False LOC110531908
XR_005038527.1 mRNA upstream 162814 11103180 ~ 11138302 (+) False LOC110531908
XR_005038528.1 mRNA upstream 188441 11112212 ~ 11112675 (+) True LOC118942875
XM_036956853.1 mRNA upstream 398547 10900849 ~ 10902569 (+) True LOC118942874
XM_036956867.1 mRNA downstream 8025 11311190 ~ 11316722 (+) True LOC110499797
XM_036956866.1 mRNA downstream 38471 11341636 ~ 11354995 (+) True LOC110499792
XM_036956871.1 mRNA downstream 52833 11355998 ~ 11359023 (+) True LOC110518478
XM_021564084.2 mRNA downstream 107286 11410451 ~ 11414636 (+) False LOC110490628
XM_021564085.2 mRNA downstream 107286 11410451 ~ 11414640 (+) True LOC110490628
TU1954621 other upstream 28643 11270729 ~ 11272473 (+) True G1706652
TU1954537 other upstream 184691 11109428 ~ 11116425 (+) False LOC110531908
TU1953937 other upstream 1165732 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 1383097 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1547643 9748185 ~ 9753473 (+) True G1706013
TU1954697 other downstream 94875 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 94875 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 94875 11398040 ~ 11399288 (+) False G1706711
TU1954701 other downstream 94875 11398040 ~ 11399228 (+) False G1706711
TU1954702 other downstream 94875 11398040 ~ 11399228 (+) False G1706711

Expression Profile