RNA id: TU1954669


Basic Information

Item Value
RNA id TU1954669
length 466
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G1706684
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11317123 ~ 11317792 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttggccctatcagatcttacacccattaaaacctccccactattccactacttggccctatcagatcctacacccattaaaacctccccactattccactacttgACTCTATCTGATCCTACACCCACTAAAACCtccccactattccactacttggccctatcagatcctacacccattaaaacctccccactattccactacttggCACTATCAGATCCTatacccattaaaacctccccactattccactacttggCCCTATCAGATCCTatacccattaaaacctccccactattccactacttggCCCTATCAGATCCTACACCCACTAAAACCtccccactattccactacttggCCCTATCAGATCCTGCACCGGGCCTCTTTTCCACGTTAATAGCATGCATACGTAAACACAGCACCAGACCAATGTTTATCTATTATATTGACTAGAtagtgaccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954659 lncRNA upstream 13958 11298864 ~ 11303165 (+) False G1706678
TU1954663 lncRNA upstream 13958 11301116 ~ 11303165 (+) False G1706678
TU1954660 lncRNA upstream 13958 11302161 ~ 11303165 (+) False G1706678
TU1954626 lncRNA upstream 33003 11283196 ~ 11284120 (+) True G1706657
TU1954624 lncRNA upstream 39651 11276700 ~ 11277472 (+) True G1706655
TU1954679 lncRNA downstream 8444 11326236 ~ 11326720 (+) True G1706694
TU1954656 lncRNA downstream 16364 11334156 ~ 11335045 (+) True G1706678
TU1954639 lncRNA downstream 45364 11363156 ~ 11433934 (+) False G1706665
TU1954640 lncRNA downstream 45364 11363156 ~ 11377111 (+) False G1706665
TU1954641 lncRNA downstream 45364 11363156 ~ 11366927 (+) True G1706665
XM_036956867.1 mRNA upstream 401 11311190 ~ 11316722 (+) True LOC110499797
XM_036956863.1 mRNA upstream 116174 11194545 ~ 11200949 (+) True LOC118942876
XM_036956859.1 mRNA upstream 178310 11103189 ~ 11138813 (+) False LOC110531908
XR_005038527.1 mRNA upstream 178821 11103180 ~ 11138302 (+) False LOC110531908
XR_005038528.1 mRNA upstream 204448 11112212 ~ 11112675 (+) True LOC118942875
XM_036956866.1 mRNA downstream 23844 11341636 ~ 11354995 (+) True LOC110499792
XM_036956871.1 mRNA downstream 38206 11355998 ~ 11359023 (+) True LOC110518478
XM_021564084.2 mRNA downstream 92659 11410451 ~ 11414636 (+) False LOC110490628
XM_021564085.2 mRNA downstream 92659 11410451 ~ 11414640 (+) True LOC110490628
XM_036956879.1 mRNA downstream 114492 11432284 ~ 11468646 (+) False LOC110503752
TU1954621 other upstream 44650 11270729 ~ 11272473 (+) True G1706652
TU1954537 other upstream 200698 11109428 ~ 11116425 (+) False LOC110531908
TU1953937 other upstream 1181739 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 1399104 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1563650 9748185 ~ 9753473 (+) True G1706013
TU1954697 other downstream 80248 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 80248 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 80248 11398040 ~ 11399288 (+) False G1706711
TU1954701 other downstream 80248 11398040 ~ 11399228 (+) False G1706711
TU1954702 other downstream 80248 11398040 ~ 11399228 (+) False G1706711

Expression Profile