RNA id: TU1954639



Basic Information


Item Value
RNA id TU1954639
length 1962
lncRNA type read_through
GC content 0.43
exon number 2
gene id G1706665
representative False

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11363156 ~ 11433934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAAGCTGGTCGACCTCACACTCTTGAGTGTAAGGCAGAGAGCTCAACGGTACAGAAAAAACAGAGGTCCTATATAGCAGACCTAGAAATTCTTAGTCATGGCTGGTTCCACCCCTCCCATGCAGATTTGGGGCATCATAAGCTAACTTGGGTTCATCTTGTGGTTATGTTCACCGGGTGTTGTTACCCTGTACCCTGGCTTAGATTCTCAGAAACAAAAAGTATTAGAAACAATAGGGGTTTGTTTTGTTTCTCAGGCTCTCTCTATCTCGGTTTACACCATGTCCTTGACTATACCCACAGACCAGCTGCAGGGAGCTAGAGGGGAACCATCCCTTTACAGAAGCACAGCATTTGTAGTTATGAAAATCTCTTACTATTGTTAAGCATATAATTCAACAATCAATATTCAACAAAGCAGTAATATTTCCCTTACAGTTTTCACACATCAAAGTTCCTGTAGATTGTTAAAACAGGATCTCACATACTGCAGTTGCACCCAAACGGCTCTTATCTGTATGCCCAGACCCATGACTAAGTCACACAAGACAAGCCTATACTAAAATATAACCATGGATAATTTTCCAAGTAAAAACAGCATAGTATGTTCAATTAAACAACATGGTAGTTAATTCAATCATTTCCTCTAtaatggttacataagacaggttTCTTAAGGCAAAAtctaaagtagggtggttggtcggggtggataaGTGGGCATATAAcatgaacgtctagcaaccccaaggttgcgtgtttgaatctcatcacagaaAACTTTAGCAACTTTGCAATTACTTTTTAGCTACGTTGCAACTACTTATCaagttagctaacccttcccctaacccgtttagctaacccttcccctaacccgtgtagctaacccttcccctaacccgtTTAGCTAACCCAGCGTAAAATAAATTAACGTTAGGTACTAGCTGCTGTGTTGTATCGCTAGTTAGCAAAAAAACGACCGAGTTGTTGTAAAACACATAGCTTCGCTGATATGCAGCTATGTTTTTTTCCAACTCTTCACAGTGAAGGCAGTGGTCCCTTTATTGATACAAGCCCATGTAATGACTCGTGTGTTCCCCTTTGGCCTGGAAATGTACTCGCTAGGTAACGTTAGGTGTCTCATAAGAGATGAATATTCGCCACAGAAACGTTAGCTGTCCATTCCAATGTTTACATTGCTAAAAGTCGACAGTATTCTGGAGCAACGTTTTGCTCTCGATGACGTCTTTCAACCACTTCTCCCTGAACCTCGTTTTCCCTGGCCTGTGTGTCAGCCTGTTCGACTCCACTAGAAAGTACACCTCCACGGGCAAAGTCTGAGGTTTGATCTTGGAAATCACAATGACAAAGTAGACACTGGCAGTCGCCTTGGGGATTGGTGTGCGTCGGGTGGGGATGCTCCATTGTGCCCGGTAGTGGTACTGTTTGTGAAACTCATGATCCGTCTCCTCGAGGAATACTAGGCTAAAAAGCCAGCTGGTGTGCACCTCCCATGTGTGGATGTACTCCTCGATTCGCACTTTCCCCAGTTCAATTGTAAAGTCCTTGCAAGTGATCCATTCGATGTTTCTAAACTCGTATTCGGTGGAGTCTTCCACCTCTTGCTGGTGGCCGAGGGCACCGCGTGCGTTCTCCAGTACATTTTTCACGATTTCAGATGCTCTCAAGCTTAGGTTTGATGAAGGCCTCTCGTCCATCGTGTTTCTCTTCGTATATCAAAACTTACTTTAATAAAGTATTTGGAAACCCGTAGATATCAGTCGTTTTCTACACTGGAAAAcgaatgttgttgttttgaagGGTTTCCATGGCTACCATGGAACAGAAGGAACATCCGGGGATTTGATAGCACTGGTTGGCCATTCAAACCCTATCTATTTTTTTTGTGTGGGACAAATACCTTTGTTCATTCTAATGAGGGGCTCCATTGTGGTTTTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1954658 lncRNA upstream 28111 11298864 ~ 11335045 (+) False G1706678
TU1954656 lncRNA upstream 28111 11334156 ~ 11335045 (+) True G1706678
TU1954679 lncRNA upstream 36436 11326236 ~ 11326720 (+) True G1706694
TU1954669 lncRNA upstream 45364 11317123 ~ 11317792 (+) True G1706684
TU1954659 lncRNA upstream 59991 11298864 ~ 11303165 (+) False G1706678
TU1954631 lncRNA downstream 33652 11467586 ~ 11468646 (+) True LOC110503752
TU1954738 lncRNA downstream 39537 11473471 ~ 11474136 (+) True G1706735
TU1954744 lncRNA downstream 43330 11477264 ~ 11477469 (+) True G1706737
TU1955753 lncRNA downstream 103967 11537901 ~ 11539687 (+) True G1707481
TU1955774 lncRNA downstream 135795 11569729 ~ 11573981 (+) False G1707494
XM_036956871.1 mRNA upstream 4133 11355998 ~ 11359023 (+) True LOC110518478
XM_036956866.1 mRNA upstream 8161 11341636 ~ 11354995 (+) True LOC110499792
XM_036956867.1 mRNA upstream 46434 11311190 ~ 11316722 (+) True LOC110499797
XM_036956863.1 mRNA upstream 162207 11194545 ~ 11200949 (+) True LOC118942876
XM_036956859.1 mRNA upstream 224343 11103189 ~ 11138813 (+) False LOC110531908
XM_036956881.1 mRNA downstream 45846 11479780 ~ 11624211 (+) False nrcama
XM_036956883.1 mRNA downstream 45846 11479780 ~ 11624211 (+) False nrcama
XM_036956884.1 mRNA downstream 45846 11479780 ~ 11624211 (+) False nrcama
XM_036956888.1 mRNA downstream 45847 11479781 ~ 11624211 (+) False nrcama
XM_036956891.1 mRNA downstream 45847 11479781 ~ 11624211 (+) False nrcama
TU1954621 other upstream 90683 11270729 ~ 11272473 (+) True G1706652
TU1954537 other upstream 246731 11109428 ~ 11116425 (+) False LOC110531908
TU1953937 other upstream 1227772 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 1445137 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1609683 9748185 ~ 9753473 (+) True G1706013
TU1955767 other downstream 134495 11568429 ~ 11568956 (+) True G1707493
TU1955728 other downstream 219967 11653901 ~ 11654623 (+) True G1707462
TU1956174 other downstream 429728 11863662 ~ 11864573 (+) True G1707772
TU1956462 other downstream 814094 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 1144674 12578608 ~ 12584156 (+) True G1708323

Expression Profile