RNA id: TU1954641


Basic Information

Item Value
RNA id TU1954641
length 2924
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1706665
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11363156 ~ 11433934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGCTGGTCGACCTCACACTCTTGAGTGTAAGGCAGAGAGCTCAACGGTACAGAAAAAACAGAGGTCCTATATAGCAGACCTAGAAATTCTTAGTCATGGCTGGTTCCACCCCTCCCATGCAGATTTGGGGCATCATAAGCTAACTTGGGTTCATCTTGTGGTTATGTTCACCGGGTGTTGTTACCCTGTACCCTGGCTTAGATTCTCAGAAACAAAAAGTATTAGAAACAATAGGGGTTTGTTTTGTTTCTCAGGCTCTCTCTATCTCGGTTTACACCATGTCCTTGACTATACCCACAGACCAGCTGCAGGGAGCTAGAGGGGAACCATCCCTTTACAGAAGCACAGCATTTGTAGTTATGAAAATCTCTTACTATTGTTAAGCATATAATTCAACAATCAATATTCAACAAAGCAGTAATATTTCCCTTACAGTTTTCACACATCAAAGTTCCTGTAGATTGTTAAAACAGGATCTCACATACTGCAGTTGCACCCAAACGGCTCTTATCTGTATGCCCAGACCCATGACTAAGTCACACAAGACAAGCCTATACTAAAATATAACCATGGATAATTTTCCAAGTAAAAACAGCATAGTATGTTCAATTAAACAACATGGTAGTTAATTCAATCATTTCCTCTAtaatggttacataagacaggttTCTTAAGGCAAAAtctaaagtagggtggttggtcggggtggataaGTGGGCATATAAcatgaacgtctagcaaccccaaggttgcgtgtttgaatctcatcacagaaAACTTTAGCAACTTTGCAATTACTTTTTAGCTACGTTGCAACTACTTATCaagttagctaacccttcccctaacccgtttagctaacccttcccctaacccgtgtagctaacccttcccctaacccgtgtagctaacccttcccctaacccgtttagctaacccttcccctaacccgtttagctaacccttcccctaacccttcccctaacccttttagctaacccttcccctaacccgtttagccaacccttcccctaacccgtttagctaacccttcccctaacccttcccctaacccttttagctaatccttcccctaacccgtttagctaacccttcccctaacccttcccctaacccttttagctaacccttcccctaacccttttagctaacccttcccctaacccttttagctaatccttcccctaacccgtttagctaacccttttagctaacccttcccctaaccttaacccctagagCTAGTTAGCGTTATCCATTTAGCTGTTAGCAacaacaaattgtaatttgtGACATATGATACGTTTAACAAATTCGAAACATATCGTGTGAATTGTTATTCATaatatatcatacaaaatggataatGGACATCCCCAAATAAAGATACAATACATATCATAGTAAATGGAGTGTTTTGGATTATATACGCACAAAacaatacgaaatgctctgagaccatgttgagaaaaccaggcacagaaTCATGcaatggggatgtttttcagcggcatggactgggagactggcaaggacagagggaacaatgaatgacaatgaatgaccccaagcatacagctaAAGCAATACTGGAATGACTAAAGaacaagtccttgagtggcccagccaaagcccagacttgaacccattgaaaatctgtggattgaaggacttgaagattgctgtttttcacctctccccatcttatttaacagagcttgagaacagaacagagcgtgACAAaaggaagaatgagagaaaaaaaaatccagatgtGTAAAGCTGATACAAACAAACCCAAGACAAAGCaaatctgtaatcgctgccaaaggtgcttctacaagtATAGACTCAGGGGTTTAAATACTTATGCAAATttgatttctgtatttaattttcaatacatttgctaaacatTTTTCTATGGATTGAGATGTAGCCTACATTGGGCCTTTATGATATCCTTTACAAATCAAactacattttattggtcacgtacacatatttatcagatgtatgtgagtgagtagtgaaatgcttgtgttgcagctccaacagtgcagtaatatctccTTTCTGTAATGTTTCCTTTCTTTCTGTCACCAAATGTTTTCATAATATtaaagttaccaggttgttagGGCCATACTGGCCAAACATTTTGTTCTTATATTTATATGATAATAGAgatgtgtggacaggtgtattcaTATTTAGAAGCAATGTGGAAAGCAGTATCGTTGTTGTTTTGGAAAAATCTGTTGAGTTCATGCTGAGACAAACCAAAAAAGGAAAATCCCTACACACACGAATGAAACTGTCAGTGAAACTGATATaattaataacacacacacaccacacagacagacagacagacagacacacacacaccacacagacagacagacacacacacacaccacacagacagacagacagacagacagacacacacacacaccacacagacagacagacagacacacgcacacacactaatgaAACTCAGCTGTAAATCAACATCTGTCTTGACTTAATGTGTGTTTTCCTGGATAACAATACTCTGATTCATAGCAGTTCACTGGAAACGgttaaaatctatttagtctccaCAGAACGTTGTGACTTTATATGAGTGAATCAGAGAGGAATTTGAGAGTGAAGAGCAGGAGACAGAGGCTTTAGTTCTGAACTATACATTCTTTAAAAATTAAACACTGAGATTCCCAAAGGCAGGTCATCTCCAAATCAAGCTTTAACATAGAGTAGATTTGTGTCACTATGGCAGTATGATTTCTGCCACTAGTGGCTGTGTGTGTAGCTGGTCGACGGGCCCCAGTGTCAGCGCCCCTTGTAGACCGAGTCTCTGCTCTGCACTCAGCGCCGGAGTCTCGTAGTGGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954656 lncRNA upstream 28111 11334156 ~ 11335045 (+) True G1706678
TU1954679 lncRNA upstream 36436 11326236 ~ 11326720 (+) True G1706694
TU1954669 lncRNA upstream 45364 11317123 ~ 11317792 (+) True G1706684
TU1954663 lncRNA upstream 59991 11301116 ~ 11303165 (+) False G1706678
TU1954693 lncRNA downstream 3204 11370131 ~ 11383885 (+) False G1706708
TU1954694 lncRNA downstream 3204 11370131 ~ 11383885 (+) True G1706708
TU1954696 lncRNA downstream 19806 11386733 ~ 11403507 (+) True G1706710
TU1954635 lncRNA downstream 29582 11396509 ~ 11397615 (+) True G1706662
TU1954722 lncRNA downstream 51745 11418672 ~ 11419205 (+) True G1706723
XM_036956871.1 mRNA upstream 4133 11355998 ~ 11359023 (+) True LOC110518478
XM_036956866.1 mRNA upstream 8161 11341636 ~ 11354995 (+) True LOC110499792
XM_036956867.1 mRNA upstream 46434 11311190 ~ 11316722 (+) True LOC110499797
XM_036956863.1 mRNA upstream 162207 11194545 ~ 11200949 (+) True LOC118942876
XR_005038528.1 mRNA upstream 250481 11112212 ~ 11112675 (+) True LOC118942875
XM_021564084.2 mRNA downstream 43524 11410451 ~ 11414636 (+) False LOC110490628
XM_021564085.2 mRNA downstream 43524 11410451 ~ 11414640 (+) True LOC110490628
XM_036956879.1 mRNA downstream 65357 11432284 ~ 11468646 (+) False LOC110503752
XM_036956880.1 mRNA downstream 65357 11432284 ~ 11468646 (+) False LOC110503752
XM_036956881.1 mRNA downstream 112853 11479780 ~ 11624211 (+) False nrcama
TU1954621 other upstream 90683 11270729 ~ 11272473 (+) True G1706652
TU1954537 other upstream 246731 11109428 ~ 11116425 (+) False LOC110531908
TU1953937 other upstream 1227772 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 1445137 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1609683 9748185 ~ 9753473 (+) True G1706013
TU1954697 other downstream 31113 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 31113 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 31113 11398040 ~ 11399288 (+) False G1706711
TU1954701 other downstream 31113 11398040 ~ 11399228 (+) False G1706711
TU1954702 other downstream 31113 11398040 ~ 11399228 (+) False G1706711

Expression Profile