RNA id: TU1954707


Basic Information

Item Value
RNA id TU1954707
length 1072
RNA type TUCP
GC content 0.45
exon number 2
gene id G1706711
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11398040 ~ 11399288 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCATTTTGAAGATTTGAATGTGTAATTTACAGACAGTCAATCACTTATCACCAATGTCAGGCATCAGTCAATGATGGCACTGTGAAACTCACTGAAACACCTCGAGGCGGCGCTCTTAGCGCTGTTCGTCTGCAGACATAACAACTGTCTTGTGAAATAAAAAGGGGTTCAAAAGTTGTTTGTATTAGTCAACGGTGGAGTCGGCTTGCAGTTTCAAAATGGTGGTTCCTTTCTTTATGTCTACATTTCCAAGTAACTGTTCAGGCTGACCAGTACAGTACACAACTATTCACACAAGGTGAGGTTGACCAGTACTGTACACAACTATTCACACAAGGTGAGGCTGACCAGTACTGTACACAACTATTCACACAAGGTGAGGTTGACCAGTACAGTACACAACTATTCACACAAGGTGAGGTTGACCAGTACTGTACACAACTATTCACACAAGGTGAGGCTGACCAGTTAGGGCTGATCGGATCATTAAGCCATAAACAGTAAAAAACTATGGAAAACAATGGAAAAAGATTGTTCTCATTGTCAGCAGAAAACCATCTTTAATAGAAGGCCTGTGTGGCTGAAAGCGCTGAACTGAGCTTTTAGAATTTGAGCAATTCCAGTggcggctggtgggaggagctacaggaggacgggctcattgttatggctggaatggaattgatggaatggtatcaaacacatggaaaacacgtttgactccgttccaatcattcctttccagccattacaatgagcctatcctcctatatctcctctcaccagcctccactgagcaATTCAATGTTAGCGCCCAAAGTGTCTTCAGTCATACAGAAACACTCTGGTCCTGGTTAGCGGTGGTAGGAATGGTTTGGTCCGGAGTAGGCCGGGTGTTGGTCATCAGGGTAGGCAAGGATTTCTTCAGGGTAGGCAAGGTTTGTATGTGCGTAGGCCTGGTTTGGTTCAGGATAGGTACGGTTTTGGTCAGGGTAGTCAGGGTCATCAAGGTAGTCAGGGTTTGGTTCACAATGTTCCTCAGAGAGAATCAGTTGACTAACATTTCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954635 lncRNA upstream 425 11396509 ~ 11397615 (+) True G1706662
TU1954693 lncRNA upstream 14155 11370131 ~ 11383885 (+) False G1706708
TU1954694 lncRNA upstream 14155 11370131 ~ 11383885 (+) True G1706708
TU1954640 lncRNA upstream 20929 11363156 ~ 11377111 (+) False G1706665
TU1954641 lncRNA upstream 31113 11363156 ~ 11366927 (+) True G1706665
TU1954722 lncRNA downstream 19444 11418672 ~ 11419205 (+) True G1706723
TU1954631 lncRNA downstream 68358 11467586 ~ 11468646 (+) True LOC110503752
TU1954738 lncRNA downstream 74243 11473471 ~ 11474136 (+) True G1706735
TU1954744 lncRNA downstream 78036 11477264 ~ 11477469 (+) True G1706737
TU1955753 lncRNA downstream 138673 11537901 ~ 11539687 (+) True G1707481
XM_036956871.1 mRNA upstream 39017 11355998 ~ 11359023 (+) True LOC110518478
XM_036956866.1 mRNA upstream 43045 11341636 ~ 11354995 (+) True LOC110499792
XM_036956867.1 mRNA upstream 81318 11311190 ~ 11316722 (+) True LOC110499797
XM_036956863.1 mRNA upstream 197091 11194545 ~ 11200949 (+) True LOC118942876
XR_005038528.1 mRNA upstream 285365 11112212 ~ 11112675 (+) True LOC118942875
XM_021564084.2 mRNA downstream 11223 11410451 ~ 11414636 (+) False LOC110490628
XM_021564085.2 mRNA downstream 11223 11410451 ~ 11414640 (+) True LOC110490628
XM_036956879.1 mRNA downstream 33056 11432284 ~ 11468646 (+) False LOC110503752
XM_036956880.1 mRNA downstream 33056 11432284 ~ 11468646 (+) False LOC110503752
XM_036956881.1 mRNA downstream 80552 11479780 ~ 11624211 (+) False nrcama
TU1954621 other upstream 125567 11270729 ~ 11272473 (+) True G1706652
TU1954537 other upstream 281615 11109428 ~ 11116425 (+) False LOC110531908
TU1953937 other upstream 1262656 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 1480021 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 1644567 9748185 ~ 9753473 (+) True G1706013
TU1955767 other downstream 169201 11568429 ~ 11568956 (+) True G1707493
TU1955728 other downstream 254673 11653901 ~ 11654623 (+) True G1707462
TU1956174 other downstream 464434 11863662 ~ 11864573 (+) True G1707772
TU1956462 other downstream 848800 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 1179380 12578608 ~ 12584156 (+) True G1708323

Expression Profile