RNA id: TU1954744



Basic Information


Item Value
RNA id TU1954744
length 206
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G1706737
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11477264 ~ 11477469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctcttccaccaaggcacctgcaagttcctggacatttctggggggaatggccctagccctcaccctctgatccaacaggtcccagacgtgctcaatgggattgagatccgggctcttcgctggccatggcagaacactgacattcctgtcttgcaggaaatcacgcacagaacgagcagtatggctggtggcattgtcatgctgga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1954738 lncRNA upstream 3128 11473471 ~ 11474136 (+) True G1706735
TU1954631 lncRNA upstream 8618 11467586 ~ 11468646 (+) True LOC110503752
TU1954722 lncRNA upstream 58059 11418672 ~ 11419205 (+) True G1706723
TU1954696 lncRNA upstream 73757 11386733 ~ 11403507 (+) True G1706710
TU1954635 lncRNA upstream 79649 11396509 ~ 11397615 (+) True G1706662
TU1955753 lncRNA downstream 60432 11537901 ~ 11539687 (+) True G1707481
TU1955774 lncRNA downstream 92260 11569729 ~ 11573981 (+) False G1707494
TU1955772 lncRNA downstream 92349 11569818 ~ 11573221 (+) True G1707494
TU1955775 lncRNA downstream 95813 11573282 ~ 11574039 (+) True G1707495
TU1955777 lncRNA downstream 101193 11578662 ~ 11579435 (+) True G1707497
XM_036956879.1 mRNA upstream 8618 11432284 ~ 11468646 (+) False LOC110503752
XM_036956880.1 mRNA upstream 8618 11432284 ~ 11468646 (+) False LOC110503752
XM_021564085.2 mRNA upstream 62624 11410451 ~ 11414640 (+) True LOC110490628
XM_021564084.2 mRNA upstream 62628 11410451 ~ 11414636 (+) False LOC110490628
XM_036956871.1 mRNA upstream 118241 11355998 ~ 11359023 (+) True LOC110518478
XM_036956881.1 mRNA downstream 2311 11479780 ~ 11624211 (+) False nrcama
XM_036956883.1 mRNA downstream 2311 11479780 ~ 11624211 (+) False nrcama
XM_036956884.1 mRNA downstream 2311 11479780 ~ 11624211 (+) False nrcama
XM_036956888.1 mRNA downstream 2312 11479781 ~ 11624211 (+) False nrcama
XM_036956891.1 mRNA downstream 2312 11479781 ~ 11624211 (+) False nrcama
TU1954699 other upstream 77976 11398040 ~ 11399288 (+) False G1706711
TU1954703 other upstream 77976 11398040 ~ 11399288 (+) False G1706711
TU1954698 other upstream 78036 11398040 ~ 11399228 (+) False G1706711
TU1955767 other downstream 90960 11568429 ~ 11568956 (+) True G1707493
TU1955728 other downstream 176432 11653901 ~ 11654623 (+) True G1707462
TU1956174 other downstream 386193 11863662 ~ 11864573 (+) True G1707772
TU1956462 other downstream 770559 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 1101139 12578608 ~ 12584156 (+) True G1708323

Expression Profile