RNA id: TU1955753


Basic Information

Item Value
RNA id TU1955753
length 387
lncRNA type intronic
GC content 0.40
exon number 3
gene id G1707481
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11537901 ~ 11539687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagtgtaacattgtaactctgttgtttaggttggagtgtaactctgttgtttaggttggagtgtaactctgttgtttaggttggagtgtaactctgttgtttaggttggagtgtaactctgttgtttaggttggagtgtaacattgtaactctgttgtttaggttggagtgtaactctgttgtttaggttggagtgtaactctgttgtttaggttggagcgtaactctgttgtttaggttagagtgtaactctgttgtttaggttggagtgtaactctgttgtttaggttggagtgtaacattgtaactctgttgtttaggttggagtgtaactctgttgtttgggttggagtgtaactctgttagGTGAAAAGGGGAGATGAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954744 lncRNA upstream 60432 11477264 ~ 11477469 (+) True G1706737
TU1954738 lncRNA upstream 63765 11473471 ~ 11474136 (+) True G1706735
TU1954631 lncRNA upstream 69255 11467586 ~ 11468646 (+) True LOC110503752
TU1954722 lncRNA upstream 118696 11418672 ~ 11419205 (+) True G1706723
TU1954696 lncRNA upstream 134394 11386733 ~ 11403507 (+) True G1706710
TU1955774 lncRNA downstream 30042 11569729 ~ 11573981 (+) False G1707494
TU1955772 lncRNA downstream 30131 11569818 ~ 11573221 (+) True G1707494
TU1955775 lncRNA downstream 33595 11573282 ~ 11574039 (+) True G1707495
TU1955777 lncRNA downstream 38975 11578662 ~ 11579435 (+) True G1707497
TU1955784 lncRNA downstream 67959 11607646 ~ 11607925 (+) True G1707504
XM_036956879.1 mRNA upstream 69255 11432284 ~ 11468646 (+) False LOC110503752
XM_036956880.1 mRNA upstream 69255 11432284 ~ 11468646 (+) False LOC110503752
XM_021564085.2 mRNA upstream 123261 11410451 ~ 11414640 (+) True LOC110490628
XM_021564084.2 mRNA upstream 123265 11410451 ~ 11414636 (+) False LOC110490628
XM_036956871.1 mRNA upstream 178878 11355998 ~ 11359023 (+) True LOC110518478
XM_036956899.1 mRNA downstream 90745 11630432 ~ 11660551 (+) False cntn1b
XM_036956900.1 mRNA downstream 90756 11630443 ~ 11660551 (+) True cntn1b
XM_036956901.1 mRNA downstream 184739 11724426 ~ 11797595 (+) True LOC110515322
XM_036956912.1 mRNA downstream 351043 11890730 ~ 11931253 (+) False pphln1
XM_036956907.1 mRNA downstream 351543 11891230 ~ 11931253 (+) False pphln1
TU1954699 other upstream 138613 11398040 ~ 11399288 (+) False G1706711
TU1954703 other upstream 138613 11398040 ~ 11399288 (+) False G1706711
TU1954698 other upstream 138673 11398040 ~ 11399228 (+) False G1706711
TU1955767 other downstream 28742 11568429 ~ 11568956 (+) True G1707493
TU1955728 other downstream 114214 11653901 ~ 11654623 (+) True G1707462
TU1956174 other downstream 323975 11863662 ~ 11864573 (+) True G1707772
TU1956462 other downstream 708341 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 1038921 12578608 ~ 12584156 (+) True G1708323

Expression Profile