RNA id: TU1955775


Basic Information

Item Value
RNA id TU1955775
length 390
lncRNA type intronic
GC content 0.47
exon number 2
gene id G1707495
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11573282 ~ 11574039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caccacagatacagccattaacccaccacagatacagccacactacattaacccaccacagatacagccacactacattaaccaccacagatacagccattaacccaccacagatacagcaacactacattaacccaccacagatacagccacactacattaaccaccacagatacagccaccacagattaacccaccacagatacagcaacactacatgaaccaccacagatacagccacactacattaacccaccgcagatacagccacactacattaaccaccacagatacagccacactacattaaccaccacagatacagccaccacagattaacccaccacagatacagccaccacaGATacagcaacactacattgatccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1955772 lncRNA upstream 61 11569818 ~ 11573221 (+) True G1707494
TU1955753 lncRNA upstream 33595 11537901 ~ 11539687 (+) True G1707481
TU1954744 lncRNA upstream 95813 11477264 ~ 11477469 (+) True G1706737
TU1954738 lncRNA upstream 99146 11473471 ~ 11474136 (+) True G1706735
TU1954631 lncRNA upstream 104636 11467586 ~ 11468646 (+) True LOC110503752
TU1955777 lncRNA downstream 4623 11578662 ~ 11579435 (+) True G1707497
TU1955784 lncRNA downstream 33607 11607646 ~ 11607925 (+) True G1707504
TU1955791 lncRNA downstream 44920 11618959 ~ 11622767 (+) False G1707509
TU1955790 lncRNA downstream 46590 11620629 ~ 11622767 (+) True G1707509
TU1955727 lncRNA downstream 80885 11654924 ~ 11656704 (+) True G1707461
XM_036956879.1 mRNA upstream 104636 11432284 ~ 11468646 (+) False LOC110503752
XM_036956880.1 mRNA upstream 104636 11432284 ~ 11468646 (+) False LOC110503752
XM_021564085.2 mRNA upstream 158642 11410451 ~ 11414640 (+) True LOC110490628
XM_021564084.2 mRNA upstream 158646 11410451 ~ 11414636 (+) False LOC110490628
XM_036956871.1 mRNA upstream 214259 11355998 ~ 11359023 (+) True LOC110518478
XM_036956899.1 mRNA downstream 56393 11630432 ~ 11660551 (+) False cntn1b
XM_036956900.1 mRNA downstream 56404 11630443 ~ 11660551 (+) True cntn1b
XM_036956901.1 mRNA downstream 150387 11724426 ~ 11797595 (+) True LOC110515322
XM_036956912.1 mRNA downstream 316691 11890730 ~ 11931253 (+) False pphln1
XM_036956907.1 mRNA downstream 317191 11891230 ~ 11931253 (+) False pphln1
TU1955767 other upstream 4326 11568429 ~ 11568956 (+) True G1707493
TU1954704 other upstream 174054 11398040 ~ 11399228 (+) False G1706711
TU1955728 other downstream 79862 11653901 ~ 11654623 (+) True G1707462
TU1956174 other downstream 289623 11863662 ~ 11864573 (+) True G1707772
TU1956462 other downstream 673989 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 1004569 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 1075647 12649686 ~ 12651577 (+) True G1708367

Expression Profile