RNA id: TU1955728


Basic Information

Item Value
RNA id TU1955728
length 517
RNA type TUCP
GC content 0.50
exon number 4
gene id G1707462
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11653901 ~ 11654623 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaacccctaaccccacgaGATGGTGAGGGTcgtactaacccctaacccctaaccccacgaGATGGTGAGGGTcgtactaacccctaacccaatgAGATGGTGAGGGTCatactaacctctaaccccgtGAGATGGTGAGGGTcatactaacccctaaccccacgaGATGGTGAGGGCCATACTAGCTGTATgaccacatcccggttcaaccctaacctcaaccacaaccctaacctcaacctcaaccacaaccctaacctcaaccacgaccctaaccctaacctcaaccctaaccctagcctcaaccacaaccctaacctcaaccacaaccctaaccttaaccctaaccctaacctcaaccctaaccctagcctcaaaccAAAGAAGAAGAGCTGGAGGGGTTGCCACCACCAGGAGGAAGGTCAATAAAAAACAATGGATTTAGTGAGGCCTGCTTGTCTTCCATATTTAATGTTCTTATATGAAGCACTTTAACACAGCACTTATTAATGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1955791 lncRNA upstream 31134 11618959 ~ 11622767 (+) False G1707509
TU1955790 lncRNA upstream 31134 11620629 ~ 11622767 (+) True G1707509
TU1955784 lncRNA upstream 45976 11607646 ~ 11607925 (+) True G1707504
TU1955777 lncRNA upstream 74466 11578662 ~ 11579435 (+) True G1707497
TU1955775 lncRNA upstream 79862 11573282 ~ 11574039 (+) True G1707495
TU1955727 lncRNA downstream 301 11654924 ~ 11656704 (+) True G1707461
TU1955797 lncRNA downstream 8082 11662705 ~ 11663646 (+) True G1707515
TU1955806 lncRNA downstream 14324 11668947 ~ 11669233 (+) True G1707522
TU1955814 lncRNA downstream 27185 11681808 ~ 11683020 (+) True G1707527
TU1955827 lncRNA downstream 42156 11696779 ~ 11697038 (+) True G1707533
XM_036956881.1 mRNA upstream 29690 11479780 ~ 11624211 (+) False nrcama
XM_036956883.1 mRNA upstream 29690 11479780 ~ 11624211 (+) False nrcama
XM_036956884.1 mRNA upstream 29690 11479780 ~ 11624211 (+) False nrcama
XM_036956888.1 mRNA upstream 29690 11479781 ~ 11624211 (+) False nrcama
XM_036956891.1 mRNA upstream 29690 11479781 ~ 11624211 (+) False nrcama
XM_036956901.1 mRNA downstream 69803 11724426 ~ 11797595 (+) True LOC110515322
XM_036956912.1 mRNA downstream 236107 11890730 ~ 11931253 (+) False pphln1
XM_036956907.1 mRNA downstream 236607 11891230 ~ 11931253 (+) False pphln1
XM_036956915.1 mRNA downstream 236663 11891286 ~ 11931252 (+) False pphln1
XM_036956904.1 mRNA downstream 236663 11891286 ~ 11931253 (+) False pphln1
TU1955767 other upstream 84945 11568429 ~ 11568956 (+) True G1707493
TU1954699 other upstream 254613 11398040 ~ 11399288 (+) False G1706711
TU1954703 other upstream 254613 11398040 ~ 11399288 (+) False G1706711
TU1954698 other upstream 254673 11398040 ~ 11399228 (+) False G1706711
TU1956174 other downstream 209039 11863662 ~ 11864573 (+) True G1707772
TU1956462 other downstream 593405 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 923985 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 995063 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 1129584 12784207 ~ 12785502 (+) True G1708495

Expression Profile