RNA id: TU1955727


Basic Information

Item Value
RNA id TU1955727
length 1610
lncRNA type intronic
GC content 0.43
exon number 3
gene id G1707461
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11654924 ~ 11656704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCTCCTGTTGTTGAACCGTCATGGGTTTGTCTTCCTCCTGTTGTTGAAGCGTCATGGGTTTGTCTTCCTCCTGTTGTTGAACCGTCATGGGTGACCCCCTCGGAGCTCTGGGCCTTTCATGTTCTCACCGGCTCTAGACCGGTCTGATGTACAATATAGAAACAGGGCAGAAAGTTGTAATAGGCCTGTGCAACCCAAAGAAACcctcttaaacctaaccctagcctcagccctaaccctaaccctcagccctaaccctagcttcaaccCTAACCTGTAGCCCTAACCATAgccctagccatgGTAAACATGTTCTTTAACCTCTTCAACATGATAGTGTCATGATGTTGCcatctttgggtacagcgagtaccatccccctctctctgtctcatacaACTAGGCTGCAgtggtcagagaggtcgtaaattcctggaggagatgatctcctcatggccacagtatagagacagagatttcATAGAgatttcatagagaacaaaggaatttcttccacctcacagaacttgaggtccgaacaacatttatgttccgtAGAAGGTATAAAatatcggtgaagaatccagctacgaactggtccagtTTGTACAATTTggtgaagctcatgggagacggtgcggccacattaccataatgctgtttatataatagcctcagatatgaggcttacatctaattgttgtataagatgaattaGTGAGGATGATACtatttgtaaaattgtgtaatgtgattttggattGTTTAaggaaggaaactccaattcccttttgagtttaactaaatcggAGGACCGCCCATGAGTCCAGTTAGGgtcgggcatcctgggacaggcccttttctgcaactcccgaataaaaccccaactttgagaatttctcaacagaccatgtttctctccattacgagaggacaaaggttgcagaccagcttacctcgataactagagggccaaggtttgagaccagactgctgaatcttttaaccatcccacgtggttaaacttagcttatcgataccgacagaataagaacaagtctttgatattaattactagtctgcagctaggaattcggcatcattgaatgcgaagaacgacaaccgctgaAATATCTATCcataacgacatgaatgaatgtcactctgaactatccaacctaaccacgacagagagggagagagacgaacaattctacaaaagaaacaaacttttcaccagcgatcaagacgacacactgagcgtaaatatatatattgattgcaattgttcccgaatgagtgagtgttcatgtgcaaaggattagcatttcaattgttataattatcactctgtagtgacttcttagtcgacccccacttccccttttgtctaacaagccaccgtgccggttcagcccactagggcacattctatcatttcatgtaaccatatttactttgtttgtttgtgtgtgcatttctgtgattatttagttagtcaATAAATAAATTAtgtaagacaattgatgtatggatgactcatagtgaagactgggttcgtgcagataaccaaaaatgtacaacgtttggaatgagactaacgtgagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1955791 lncRNA upstream 32157 11618959 ~ 11622767 (+) False G1707509
TU1955790 lncRNA upstream 32157 11620629 ~ 11622767 (+) True G1707509
TU1955784 lncRNA upstream 46999 11607646 ~ 11607925 (+) True G1707504
TU1955777 lncRNA upstream 75489 11578662 ~ 11579435 (+) True G1707497
TU1955775 lncRNA upstream 80885 11573282 ~ 11574039 (+) True G1707495
TU1955797 lncRNA downstream 6001 11662705 ~ 11663646 (+) True G1707515
TU1955806 lncRNA downstream 12243 11668947 ~ 11669233 (+) True G1707522
TU1955814 lncRNA downstream 25104 11681808 ~ 11683020 (+) True G1707527
TU1955827 lncRNA downstream 40075 11696779 ~ 11697038 (+) True G1707533
TU1955829 lncRNA downstream 44164 11700868 ~ 11701085 (+) True G1707535
XM_036956881.1 mRNA upstream 30713 11479780 ~ 11624211 (+) False nrcama
XM_036956883.1 mRNA upstream 30713 11479780 ~ 11624211 (+) False nrcama
XM_036956884.1 mRNA upstream 30713 11479780 ~ 11624211 (+) False nrcama
XM_036956888.1 mRNA upstream 30713 11479781 ~ 11624211 (+) False nrcama
XM_036956891.1 mRNA upstream 30713 11479781 ~ 11624211 (+) False nrcama
XM_036956901.1 mRNA downstream 67722 11724426 ~ 11797595 (+) True LOC110515322
XM_036956912.1 mRNA downstream 234026 11890730 ~ 11931253 (+) False pphln1
XM_036956907.1 mRNA downstream 234526 11891230 ~ 11931253 (+) False pphln1
XM_036956915.1 mRNA downstream 234582 11891286 ~ 11931252 (+) False pphln1
XM_036956904.1 mRNA downstream 234582 11891286 ~ 11931253 (+) False pphln1
TU1955728 other upstream 301 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 85968 11568429 ~ 11568956 (+) True G1707493
TU1954704 other upstream 255696 11398040 ~ 11399228 (+) False G1706711
TU1956174 other downstream 206958 11863662 ~ 11864573 (+) True G1707772
TU1956462 other downstream 591324 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 921904 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 992982 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 1127503 12784207 ~ 12785502 (+) True G1708495

Expression Profile