RNA id: TU1955806


Basic Information

Item Value
RNA id TU1955806
length 287
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G1707522
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11668947 ~ 11669233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAAACTACCTCATTAAGGGCTAGCCTGACGACCTCTCACCTAGCAGTAGTGTACAGCAGAGTAAACTACCTCATTAAGGGCTAGCCTGACAACCTCTCACCTAGCAGTAGTGTACAGCAGAGTAAACTACCTCATTAAGGGCTAGCCTGACGACCTCTCACCTAGCAGTAGTGTACAGCAGCAGGCTGACAGATTGGCTGCCACGCTGATAAAAGGAGAATACGATGCCACCGTAGCCTTGCCTGAAAACATAACGCATCACTCAGGACCCGGACCCTGGAGGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1955797 lncRNA upstream 5301 11662705 ~ 11663646 (+) True G1707515
TU1955727 lncRNA upstream 12243 11654924 ~ 11656704 (+) True G1707461
TU1955791 lncRNA upstream 46180 11618959 ~ 11622767 (+) False G1707509
TU1955790 lncRNA upstream 46180 11620629 ~ 11622767 (+) True G1707509
TU1955784 lncRNA upstream 61022 11607646 ~ 11607925 (+) True G1707504
TU1955814 lncRNA downstream 12575 11681808 ~ 11683020 (+) True G1707527
TU1955827 lncRNA downstream 27546 11696779 ~ 11697038 (+) True G1707533
TU1955829 lncRNA downstream 31635 11700868 ~ 11701085 (+) True G1707535
TU1955833 lncRNA downstream 39629 11708862 ~ 11709097 (+) True G1707539
TU1955835 lncRNA downstream 40645 11709878 ~ 11710101 (+) True G1707541
XM_036956899.1 mRNA upstream 8396 11630432 ~ 11660551 (+) False cntn1b
XM_036956900.1 mRNA upstream 8396 11630443 ~ 11660551 (+) True cntn1b
XM_036956887.1 mRNA upstream 44736 11479786 ~ 11624211 (+) False nrcama
XM_036956901.1 mRNA downstream 55193 11724426 ~ 11797595 (+) True LOC110515322
XM_036956912.1 mRNA downstream 221497 11890730 ~ 11931253 (+) False pphln1
XM_036956907.1 mRNA downstream 221997 11891230 ~ 11931253 (+) False pphln1
XM_036956915.1 mRNA downstream 222053 11891286 ~ 11931252 (+) False pphln1
XM_036956904.1 mRNA downstream 222053 11891286 ~ 11931253 (+) False pphln1
TU1955728 other upstream 14324 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 99991 11568429 ~ 11568956 (+) True G1707493
TU1954706 other upstream 269719 11398040 ~ 11399228 (+) False G1706711
TU1956174 other downstream 194429 11863662 ~ 11864573 (+) True G1707772
TU1956462 other downstream 578795 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 909375 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 980453 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 1114974 12784207 ~ 12785502 (+) True G1708495

Expression Profile