RNA id: TU1955827


Basic Information

Item Value
RNA id TU1955827
length 260
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1707533
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11696779 ~ 11697038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCGGACCTGCTATCATTTGTCTCACTGTGTCTctggcagacagacagtacagcTGTTTTCAGATGGGGGAGTTTTCCATACAGTATGTGCTAGCTAAGCTCCTATCTACTGCACATTGATAGACTCGTTGTACTTATATGATAGACTCAATGTACTACATTTCTAAACCACATGTCTTCGATACATTCGTGTTTTCATAAAGATTCAGCATGAATAAGAAATCTACCAAACATGGAGCGTTTTGTTCATGGTCTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1955814 lncRNA upstream 13759 11681808 ~ 11683020 (+) True G1707527
TU1955806 lncRNA upstream 27546 11668947 ~ 11669233 (+) True G1707522
TU1955797 lncRNA upstream 33133 11662705 ~ 11663646 (+) True G1707515
TU1955727 lncRNA upstream 40075 11654924 ~ 11656704 (+) True G1707461
TU1955791 lncRNA upstream 74012 11618959 ~ 11622767 (+) False G1707509
TU1955829 lncRNA downstream 3830 11700868 ~ 11701085 (+) True G1707535
TU1955833 lncRNA downstream 11824 11708862 ~ 11709097 (+) True G1707539
TU1955835 lncRNA downstream 12840 11709878 ~ 11710101 (+) True G1707541
TU1955837 lncRNA downstream 16977 11714015 ~ 11714302 (+) True G1707543
TU1956109 lncRNA downstream 109828 11806866 ~ 11807317 (+) True G1707716
XM_036956899.1 mRNA upstream 36228 11630432 ~ 11660551 (+) False cntn1b
XM_036956900.1 mRNA upstream 36228 11630443 ~ 11660551 (+) True cntn1b
XM_036956887.1 mRNA upstream 72568 11479786 ~ 11624211 (+) False nrcama
XM_036956901.1 mRNA downstream 27388 11724426 ~ 11797595 (+) True LOC110515322
XM_036956912.1 mRNA downstream 193692 11890730 ~ 11931253 (+) False pphln1
XM_036956907.1 mRNA downstream 194192 11891230 ~ 11931253 (+) False pphln1
XM_036956915.1 mRNA downstream 194248 11891286 ~ 11931252 (+) False pphln1
XM_036956904.1 mRNA downstream 194248 11891286 ~ 11931253 (+) False pphln1
TU1955728 other upstream 42156 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 127823 11568429 ~ 11568956 (+) True G1707493
TU1954706 other upstream 297551 11398040 ~ 11399228 (+) False G1706711
TU1956174 other downstream 166624 11863662 ~ 11864573 (+) True G1707772
TU1956462 other downstream 550990 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 881570 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 952648 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 1087169 12784207 ~ 12785502 (+) True G1708495

Expression Profile