RNA id: TU1955835


Basic Information

Item Value
RNA id TU1955835
length 224
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1707541
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11709878 ~ 11710101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCGACCCCTCTTGCCCCCTGGCTCCAGGGTTAAAGGTCAAGCTACATCCAATGTCACAACCTTACGTTCGTTCTCAGAACAGGCCCCGTTCAGATTGTTTAACGCATTTACAAGGTCAATCTATACAAAGTGCCCTATTGGTTGACACTGAACAGAGCAGCCAAGATTTGCAGCCACATTAGTAGATACAGAAGCTATATTTTACAGTGGGGACTTTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1955833 lncRNA upstream 781 11708862 ~ 11709097 (+) True G1707539
TU1955829 lncRNA upstream 8793 11700868 ~ 11701085 (+) True G1707535
TU1955827 lncRNA upstream 12840 11696779 ~ 11697038 (+) True G1707533
TU1955814 lncRNA upstream 26858 11681808 ~ 11683020 (+) True G1707527
TU1955806 lncRNA upstream 40645 11668947 ~ 11669233 (+) True G1707522
TU1955837 lncRNA downstream 3914 11714015 ~ 11714302 (+) True G1707543
TU1956109 lncRNA downstream 96765 11806866 ~ 11807317 (+) True G1707716
TU1956110 lncRNA downstream 98210 11808311 ~ 11808721 (+) True G1707717
TU1956134 lncRNA downstream 127504 11837605 ~ 11837808 (+) True G1707741
TU1956136 lncRNA downstream 128302 11838403 ~ 11838656 (+) True G1707743
XM_036956899.1 mRNA upstream 49327 11630432 ~ 11660551 (+) False cntn1b
XM_036956900.1 mRNA upstream 49327 11630443 ~ 11660551 (+) True cntn1b
XM_036956887.1 mRNA upstream 85667 11479786 ~ 11624211 (+) False nrcama
XM_036956901.1 mRNA downstream 14325 11724426 ~ 11797595 (+) True LOC110515322
XM_036956912.1 mRNA downstream 180629 11890730 ~ 11931253 (+) False pphln1
XM_036956907.1 mRNA downstream 181129 11891230 ~ 11931253 (+) False pphln1
XM_036956915.1 mRNA downstream 181185 11891286 ~ 11931252 (+) False pphln1
XM_036956904.1 mRNA downstream 181185 11891286 ~ 11931253 (+) False pphln1
TU1955728 other upstream 55255 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 140922 11568429 ~ 11568956 (+) True G1707493
TU1954706 other upstream 310650 11398040 ~ 11399228 (+) False G1706711
TU1956174 other downstream 153561 11863662 ~ 11864573 (+) True G1707772
TU1956462 other downstream 537927 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 868507 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 939585 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 1074106 12784207 ~ 12785502 (+) True G1708495

Expression Profile