RNA id: TU1956109


Basic Information

Item Value
RNA id TU1956109
length 452
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1707716
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11806866 ~ 11807317 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttaaggtcaaccctgttactgtcaaccctgttacggtcaaccctgttacggtcaaccctgttacggtcaaccctgttacggtcaaccctgttaaggtcaaccctgttacggtcaaccctgttacggtcaaccctgttaaggtcaaccctgttactttatttgcaCATAATAGGCAGTTACTGTGGTATTTTTTTGCAAtgtaacctcttgagatgggagaacgttattttttgttgttgtctctacTACTGAGTTAATGACAGATTAGGGCCAGCTAATGACTATGACAATATCCCATTAATTATGCCTTCATCGTCACAGCCCATAATTATCATCCAATTAATGGATcgttaaaagtttttttttttatgtagaaAGGGAACATTTATCATTGTTGTTTGTTCAGCTGAAGGACAACTAGCAATGCAACGTTAATACACATGTATTATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1955837 lncRNA upstream 92564 11714015 ~ 11714302 (+) True G1707543
TU1955835 lncRNA upstream 96765 11709878 ~ 11710101 (+) True G1707541
TU1955833 lncRNA upstream 97769 11708862 ~ 11709097 (+) True G1707539
TU1955829 lncRNA upstream 105781 11700868 ~ 11701085 (+) True G1707535
TU1955827 lncRNA upstream 109828 11696779 ~ 11697038 (+) True G1707533
TU1956110 lncRNA downstream 994 11808311 ~ 11808721 (+) True G1707717
TU1956134 lncRNA downstream 30288 11837605 ~ 11837808 (+) True G1707741
TU1956136 lncRNA downstream 31086 11838403 ~ 11838656 (+) True G1707743
TU1956159 lncRNA downstream 52771 11860088 ~ 11860296 (+) True G1707763
TU1956165 lncRNA downstream 81260 11888577 ~ 11889265 (+) True G1707768
XM_036956901.1 mRNA upstream 9271 11724426 ~ 11797595 (+) True LOC110515322
XM_036956899.1 mRNA upstream 146315 11630432 ~ 11660551 (+) False cntn1b
XM_036956900.1 mRNA upstream 146315 11630443 ~ 11660551 (+) True cntn1b
XM_036956887.1 mRNA upstream 182655 11479786 ~ 11624211 (+) False nrcama
XM_036956912.1 mRNA downstream 83413 11890730 ~ 11931253 (+) False pphln1
XM_036956907.1 mRNA downstream 83913 11891230 ~ 11931253 (+) False pphln1
XM_036956915.1 mRNA downstream 83969 11891286 ~ 11931252 (+) False pphln1
XM_036956904.1 mRNA downstream 83969 11891286 ~ 11931253 (+) False pphln1
XM_036956905.1 mRNA downstream 83973 11891290 ~ 11931253 (+) False pphln1
TU1955728 other upstream 152243 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 237910 11568429 ~ 11568956 (+) True G1707493
TU1954706 other upstream 407638 11398040 ~ 11399228 (+) False G1706711
TU1956174 other downstream 56345 11863662 ~ 11864573 (+) True G1707772
TU1956462 other downstream 440711 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 771291 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 842369 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 976890 12784207 ~ 12785502 (+) True G1708495

Expression Profile