RNA id: TU1956110


Basic Information

Item Value
RNA id TU1956110
length 411
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1707717
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11808311 ~ 11808721 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagagggtgaggacaaTAGTGAGTGTATGTTGTATCTGTATACAGAGGTTAGAGTATTCAGGTTgacaggtatagactcttagctgtatagtgttatggtcaggtatagactcttagctgtatagtgttatggtcaggtatagactcttagctgtatagtgttatggtcaggtatagactcttagctgtatagtgttatggtcaggtatagactcttagctgtatagtgttgtggtcaggtatagactcttagctgtatagtgttatggtcaggtatagactcttagctgtatagtgttgtggtcaggtatagactcttagctgtatagtgttatggtcaggtatagactcttagtcttatagtgttgtggtcaggtatagactcttagctgtatagtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956109 lncRNA upstream 994 11806866 ~ 11807317 (+) True G1707716
TU1955837 lncRNA upstream 94009 11714015 ~ 11714302 (+) True G1707543
TU1955835 lncRNA upstream 98210 11709878 ~ 11710101 (+) True G1707541
TU1955833 lncRNA upstream 99214 11708862 ~ 11709097 (+) True G1707539
TU1955829 lncRNA upstream 107226 11700868 ~ 11701085 (+) True G1707535
TU1956134 lncRNA downstream 28884 11837605 ~ 11837808 (+) True G1707741
TU1956136 lncRNA downstream 29682 11838403 ~ 11838656 (+) True G1707743
TU1956159 lncRNA downstream 51367 11860088 ~ 11860296 (+) True G1707763
TU1956165 lncRNA downstream 79856 11888577 ~ 11889265 (+) True G1707768
TU1956168 lncRNA downstream 82621 11891342 ~ 11893202 (+) False pphln1
XM_036956901.1 mRNA upstream 10716 11724426 ~ 11797595 (+) True LOC110515322
XM_036956899.1 mRNA upstream 147760 11630432 ~ 11660551 (+) False cntn1b
XM_036956900.1 mRNA upstream 147760 11630443 ~ 11660551 (+) True cntn1b
XM_036956889.1 mRNA upstream 184100 11479786 ~ 11624211 (+) False nrcama
XM_036956912.1 mRNA downstream 82009 11890730 ~ 11931253 (+) False pphln1
XM_036956907.1 mRNA downstream 82509 11891230 ~ 11931253 (+) False pphln1
XM_036956915.1 mRNA downstream 82565 11891286 ~ 11931252 (+) False pphln1
XM_036956904.1 mRNA downstream 82565 11891286 ~ 11931253 (+) False pphln1
XM_036956905.1 mRNA downstream 82569 11891290 ~ 11931253 (+) False pphln1
TU1955728 other upstream 153688 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 239355 11568429 ~ 11568956 (+) True G1707493
TU1954706 other upstream 409083 11398040 ~ 11399228 (+) False G1706711
TU1956174 other downstream 54941 11863662 ~ 11864573 (+) True G1707772
TU1956462 other downstream 439307 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 769887 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 840965 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 975486 12784207 ~ 12785502 (+) True G1708495

Expression Profile