RNA id: TU1956134


Basic Information

Item Value
RNA id TU1956134
length 204
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G1707741
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11837605 ~ 11837808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catggtctgagagtcctttaggtgccttttggcaaactccaagcgggctgtcatgtgccttttactgaggagtggcttctgtctggccactctaccataaaagcctgattggtggagtgctgcagagatggttgtctcccatctccacagaggaactgtgagggttcttggtcacctccctgacaaaggccattCTCCACCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956110 lncRNA upstream 28884 11808311 ~ 11808721 (+) True G1707717
TU1956109 lncRNA upstream 30288 11806866 ~ 11807317 (+) True G1707716
TU1955837 lncRNA upstream 123303 11714015 ~ 11714302 (+) True G1707543
TU1955835 lncRNA upstream 127504 11709878 ~ 11710101 (+) True G1707541
TU1955833 lncRNA upstream 128508 11708862 ~ 11709097 (+) True G1707539
TU1956136 lncRNA downstream 595 11838403 ~ 11838656 (+) True G1707743
TU1956159 lncRNA downstream 22280 11860088 ~ 11860296 (+) True G1707763
TU1956165 lncRNA downstream 50769 11888577 ~ 11889265 (+) True G1707768
TU1956168 lncRNA downstream 53534 11891342 ~ 11893202 (+) False pphln1
TU1956190 lncRNA downstream 58966 11896774 ~ 11897073 (+) True G1707783
XM_036956901.1 mRNA upstream 40010 11724426 ~ 11797595 (+) True LOC110515322
XM_036956899.1 mRNA upstream 177054 11630432 ~ 11660551 (+) False cntn1b
XM_036956900.1 mRNA upstream 177054 11630443 ~ 11660551 (+) True cntn1b
XM_036956889.1 mRNA upstream 213394 11479786 ~ 11624211 (+) False nrcama
XM_036956912.1 mRNA downstream 52922 11890730 ~ 11931253 (+) False pphln1
XM_036956907.1 mRNA downstream 53422 11891230 ~ 11931253 (+) False pphln1
XM_036956915.1 mRNA downstream 53478 11891286 ~ 11931252 (+) False pphln1
XM_036956904.1 mRNA downstream 53478 11891286 ~ 11931253 (+) False pphln1
XM_036956905.1 mRNA downstream 53482 11891290 ~ 11931253 (+) False pphln1
TU1955728 other upstream 182982 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 268649 11568429 ~ 11568956 (+) True G1707493
TU1954706 other upstream 438377 11398040 ~ 11399228 (+) False G1706711
TU1956174 other downstream 25854 11863662 ~ 11864573 (+) True G1707772
TU1956462 other downstream 410220 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 740800 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 811878 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 946399 12784207 ~ 12785502 (+) True G1708495

Expression Profile