RNA id: TU1956159



Basic Information


Item Value
RNA id TU1956159
length 209
lncRNA type intronic
GC content 0.40
exon number 1
gene id G1707763
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11860088 ~ 11860296 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtcagttaattaagaataCTTTCGTATTTACAATGTCGGTCCCCTAGTAGGTCAGCCAGCACCACCTCAAAGTGTTGGTCAAAAGGGTGAAGGAAAACCAATCAGCTATGAAAATAAATCTCTTGATGTTGTGGAAATAACTCAACAGTCAAGTCACGAAGAAATACATGTTATTGAACCTCCATGCGCGCTAGTGAACCTAATTCAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1956136 lncRNA upstream 21432 11838403 ~ 11838656 (+) True G1707743
TU1956134 lncRNA upstream 22280 11837605 ~ 11837808 (+) True G1707741
TU1956110 lncRNA upstream 51367 11808311 ~ 11808721 (+) True G1707717
TU1956109 lncRNA upstream 52771 11806866 ~ 11807317 (+) True G1707716
TU1955837 lncRNA upstream 145786 11714015 ~ 11714302 (+) True G1707543
TU1956165 lncRNA downstream 28281 11888577 ~ 11889265 (+) True G1707768
TU1956168 lncRNA downstream 31046 11891342 ~ 11893202 (+) False pphln1
TU1956190 lncRNA downstream 36478 11896774 ~ 11897073 (+) True G1707783
TU1956191 lncRNA downstream 47850 11908146 ~ 11908439 (+) True G1707784
TU1956192 lncRNA downstream 51666 11911962 ~ 11912473 (+) True G1707785
XM_036956901.1 mRNA upstream 62493 11724426 ~ 11797595 (+) True LOC110515322
XM_036956899.1 mRNA upstream 199537 11630432 ~ 11660551 (+) False cntn1b
XM_036956900.1 mRNA upstream 199537 11630443 ~ 11660551 (+) True cntn1b
XM_036956889.1 mRNA upstream 235877 11479786 ~ 11624211 (+) False nrcama
XM_036956912.1 mRNA downstream 30434 11890730 ~ 11931253 (+) False pphln1
XM_036956907.1 mRNA downstream 30934 11891230 ~ 11931253 (+) False pphln1
XM_036956915.1 mRNA downstream 30990 11891286 ~ 11931252 (+) False pphln1
XM_036956904.1 mRNA downstream 30990 11891286 ~ 11931253 (+) False pphln1
XM_036956905.1 mRNA downstream 30994 11891290 ~ 11931253 (+) False pphln1
TU1955728 other upstream 205465 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 291132 11568429 ~ 11568956 (+) True G1707493
TU1954706 other upstream 460860 11398040 ~ 11399228 (+) False G1706711
TU1956174 other downstream 3366 11863662 ~ 11864573 (+) True G1707772
TU1956462 other downstream 387732 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 718312 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 789390 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 923911 12784207 ~ 12785502 (+) True G1708495

Expression Profile