RNA id: TU1956174


Basic Information

Item Value
RNA id TU1956174
length 696
RNA type TUCP
GC content 0.55
exon number 2
gene id G1707772
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11863662 ~ 11864573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTAGCTGCTAAATGTGTTGATCTAGCTGTAACCTGTAGCTGCTAAATGTGTTGATCTAGCTGTAACCTGTAGCTAGTACTACAGTAAATGTGCAAGTCCAGAGATAACATTACATATCAGAGTTGAGGACAGAGGAGTGAGGTTAGAGTGGCCTATGTTAAGCCATGAGTAGTCATAGCCAAGGTCTAGGGGTCAGGGATCCAGGACAAGGTCTAGGGGTTGGGGGTCCAGGCCAAGGTCTAGGGGTTGGGGATCCAGGCCAAGGTCTCAGTGTCGGGGATCCAGGCCAAGGTCTAGGGGTTGGGGATCCAGGCCAAGGTCTAGGGGTTAGAGGTCTGAGGGTCTGTTGGGCTAGGAGTTTGGTGGTCCAGGGCCTCCAACTTGGGGAGGGAGGCTGGGGTTCCAATTGGGGTGGTCTAGTGGGACTCTGTCCCGACTAAGAAGCCCTCTCCCCGGGGTGAAGATGACCGTGAGACCCCTCTCTCAGTGTTGTTGTCTGAGCTGGAGCCACTGTGGTGttctgcagacacagacacagtgctggagggggtggtagaggtggggggtgtggtggtggtggaggaggggggaggtttGGTTTTCTCCTTAAAGTCTGTGATGATGACAGTCAGGTCTCCAACCGTGACCTCTAGGTGCTGAGCGCTGCTCCTGTCAATGTTTTTTAACCTGGgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956159 lncRNA upstream 3366 11860088 ~ 11860296 (+) True G1707763
TU1956136 lncRNA upstream 25006 11838403 ~ 11838656 (+) True G1707743
TU1956134 lncRNA upstream 25854 11837605 ~ 11837808 (+) True G1707741
TU1956110 lncRNA upstream 54941 11808311 ~ 11808721 (+) True G1707717
TU1956109 lncRNA upstream 56345 11806866 ~ 11807317 (+) True G1707716
TU1956165 lncRNA downstream 24004 11888577 ~ 11889265 (+) True G1707768
TU1956168 lncRNA downstream 26769 11891342 ~ 11893202 (+) False pphln1
TU1956190 lncRNA downstream 32201 11896774 ~ 11897073 (+) True G1707783
TU1956191 lncRNA downstream 43573 11908146 ~ 11908439 (+) True G1707784
TU1956192 lncRNA downstream 47389 11911962 ~ 11912473 (+) True G1707785
XM_036956901.1 mRNA upstream 66067 11724426 ~ 11797595 (+) True LOC110515322
XM_036956899.1 mRNA upstream 203111 11630432 ~ 11660551 (+) False cntn1b
XM_036956900.1 mRNA upstream 203111 11630443 ~ 11660551 (+) True cntn1b
XM_036956885.1 mRNA upstream 239451 11479783 ~ 11624211 (+) False nrcama
XM_036956912.1 mRNA downstream 26157 11890730 ~ 11931253 (+) False pphln1
XM_036956907.1 mRNA downstream 26657 11891230 ~ 11931253 (+) False pphln1
XM_036956915.1 mRNA downstream 26713 11891286 ~ 11931252 (+) False pphln1
XM_036956904.1 mRNA downstream 26713 11891286 ~ 11931253 (+) False pphln1
XM_036956905.1 mRNA downstream 26717 11891290 ~ 11931253 (+) False pphln1
TU1955728 other upstream 209039 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 294706 11568429 ~ 11568956 (+) True G1707493
TU1954704 other upstream 464434 11398040 ~ 11399228 (+) False G1706711
TU1956462 other downstream 383455 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 714035 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 785113 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 919634 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 936195 12800768 ~ 12813728 (+) True LOC110490810

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043798 True 2262 mRNA 0.48 5 NC_007134.7 10762684 ~ 10786400 (-)