RNA id: TU1956161


Basic Information

Item Value
RNA id TU1956161
length 441
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G1707765
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 11931271 ~ 11932509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatggaatcatgtagcaaccaagaaagtgttaaacaaataaaaatatattttatatttgagaatcttcaaagtgagagccagtttcatcatagtgcttgatggtttttgcgactgcacttgaagaaactttttaaaagttcttgacgttttccggattgactgaccttcatgtcttaaagtcgtttctctttgcttatttgagctcttcttgccatactatggacttggtgttttaccaaatagggctatcttctgtataccacccctaccttgtcacaacacaaatgattggctcaaacgcattaaggaaagaaattataAAAATGTACTTCTAAcaaaggcacatctgttaattgaaatgcattccaggtgactacctcgtgaagctggttgagggaatgccaagagagtgcaaagctgtcagaattgcaaatataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956162 lncRNA upstream 118 11916578 ~ 11931153 (+) True pphln1
TU1956192 lncRNA upstream 18798 11911962 ~ 11912473 (+) True G1707785
TU1956191 lncRNA upstream 22832 11908146 ~ 11908439 (+) True G1707784
TU1956190 lncRNA upstream 34198 11896774 ~ 11897073 (+) True G1707783
TU1956168 lncRNA upstream 38069 11891342 ~ 11893202 (+) False pphln1
TU1956320 lncRNA downstream 92611 12025120 ~ 12025345 (+) True G1707892
TU1956323 lncRNA downstream 95396 12027905 ~ 12028172 (+) True G1707895
TU1956324 lncRNA downstream 95989 12028498 ~ 12029646 (+) True G1707896
TU1956327 lncRNA downstream 105567 12038076 ~ 12038357 (+) True G1707899
TU1956334 lncRNA downstream 111105 12043614 ~ 12043860 (+) True G1707906
XM_036956912.1 mRNA upstream 18 11890730 ~ 11931253 (+) False pphln1
XM_036956907.1 mRNA upstream 18 11891230 ~ 11931253 (+) False pphln1
XM_036956904.1 mRNA upstream 18 11891286 ~ 11931253 (+) False pphln1
XM_036956905.1 mRNA upstream 18 11891290 ~ 11931253 (+) False pphln1
XM_036956910.1 mRNA upstream 18 11891305 ~ 11931253 (+) False pphln1
XM_036958473.1 mRNA downstream 436360 12368869 ~ 12384112 (+) True LOC118943005
XM_036956927.1 mRNA downstream 459120 12391629 ~ 12421266 (+) False LOC118942882
XM_036956925.1 mRNA downstream 465291 12397800 ~ 12401053 (+) False LOC110490813
XM_036956926.1 mRNA downstream 465291 12397800 ~ 12401053 (+) True LOC110490813
XM_036956924.1 mRNA downstream 476044 12408553 ~ 12415265 (+) True LOC118936492
TU1956174 other upstream 66698 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 276648 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 362315 11568429 ~ 11568956 (+) True G1707493
TU1954707 other upstream 532043 11398040 ~ 11399228 (+) False G1706711
TU1956462 other downstream 315519 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 646099 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 717177 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 851698 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 868259 12800768 ~ 12813728 (+) True LOC110490810

Expression Profile