RNA id: TU1956320


Basic Information

Item Value
RNA id TU1956320
length 226
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1707892
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12025120 ~ 12025345 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGTACAGCCTGAGTGTGAACAGGGCACAATAGAATGGCCTGTGAAGTTATTATGAGTCTGTGAGTAAATAAACACAACTCAGCCTCCATGGTTtcgtcccaaatgggaccctactTCCTATgtactcaaaagtagtgcactatgtagggaatagagttctATTCTGGACACAGCCCATCTTGTTGCCAGCCATGGTGTTATGATGCATTCTGCGCAGGTTGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956161 lncRNA upstream 92611 11931271 ~ 11932509 (+) True G1707765
TU1956162 lncRNA upstream 93967 11916578 ~ 11931153 (+) True pphln1
TU1956192 lncRNA upstream 112647 11911962 ~ 11912473 (+) True G1707785
TU1956191 lncRNA upstream 116681 11908146 ~ 11908439 (+) True G1707784
TU1956190 lncRNA upstream 128047 11896774 ~ 11897073 (+) True G1707783
TU1956323 lncRNA downstream 2560 12027905 ~ 12028172 (+) True G1707895
TU1956324 lncRNA downstream 3153 12028498 ~ 12029646 (+) True G1707896
TU1956327 lncRNA downstream 12731 12038076 ~ 12038357 (+) True G1707899
TU1956334 lncRNA downstream 18269 12043614 ~ 12043860 (+) True G1707906
TU1956361 lncRNA downstream 50635 12075980 ~ 12076381 (+) True G1707932
XM_036956911.1 mRNA upstream 93867 11891318 ~ 11931253 (+) False pphln1
XM_036958473.1 mRNA downstream 343524 12368869 ~ 12384112 (+) True LOC118943005
XM_036956927.1 mRNA downstream 366284 12391629 ~ 12421266 (+) False LOC118942882
XM_036956925.1 mRNA downstream 372455 12397800 ~ 12401053 (+) False LOC110490813
XM_036956926.1 mRNA downstream 372455 12397800 ~ 12401053 (+) True LOC110490813
XM_036956924.1 mRNA downstream 383208 12408553 ~ 12415265 (+) True LOC118936492
TU1956174 other upstream 160547 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 370497 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 456164 11568429 ~ 11568956 (+) True G1707493
TU1954707 other upstream 625892 11398040 ~ 11399228 (+) False G1706711
TU1956462 other downstream 222683 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 553263 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 624341 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 758862 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 775423 12800768 ~ 12813728 (+) True LOC110490810

Expression Profile