RNA id: TU1956334


Basic Information

Item Value
RNA id TU1956334
length 247
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G1707906
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12043614 ~ 12043860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCCTGCTACTGTCACTGTGCCGTCAGGGGATCACAAACAGTCCTGCTATCGTCACTGTGCCGTCAGGGGATCCCAAACAGTCCTGCTATCGTCACTGTGCTGTCAGGGGATCACGAACAGCCCTGCTATCGTCACTGTGCCGTCAGGGGATCATGAACAGCCCTGCTATCGTCACTGTGCCGTCAGGGGATCACGAACAGCCCTGCTATCGTCACTGTGACATCAGGGGATCACGAACAGCCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956327 lncRNA upstream 5257 12038076 ~ 12038357 (+) True G1707899
TU1956324 lncRNA upstream 13968 12028498 ~ 12029646 (+) True G1707896
TU1956323 lncRNA upstream 15442 12027905 ~ 12028172 (+) True G1707895
TU1956320 lncRNA upstream 18269 12025120 ~ 12025345 (+) True G1707892
TU1956161 lncRNA upstream 111105 11931271 ~ 11932509 (+) True G1707765
TU1956361 lncRNA downstream 32120 12075980 ~ 12076381 (+) True G1707932
TU1956375 lncRNA downstream 55263 12099123 ~ 12099364 (+) True G1707946
TU1956390 lncRNA downstream 73430 12117290 ~ 12121159 (+) True G1707956
TU1956396 lncRNA downstream 82568 12126428 ~ 12128169 (+) True G1707961
TU1956401 lncRNA downstream 99567 12143427 ~ 12143788 (+) True G1707966
XM_036956911.1 mRNA upstream 112361 11891318 ~ 11931253 (+) False pphln1
XM_036958473.1 mRNA downstream 325009 12368869 ~ 12384112 (+) True LOC118943005
XM_036956927.1 mRNA downstream 347769 12391629 ~ 12421266 (+) False LOC118942882
XM_036956925.1 mRNA downstream 353940 12397800 ~ 12401053 (+) False LOC110490813
XM_036956926.1 mRNA downstream 353940 12397800 ~ 12401053 (+) True LOC110490813
XM_036956924.1 mRNA downstream 364693 12408553 ~ 12415265 (+) True LOC118936492
TU1956174 other upstream 179041 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 388991 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 474658 11568429 ~ 11568956 (+) True G1707493
TU1954707 other upstream 644386 11398040 ~ 11399228 (+) False G1706711
TU1956462 other downstream 204168 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 534748 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 605826 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 740347 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 756908 12800768 ~ 12813728 (+) True LOC110490810

Expression Profile