RNA id: TU1956390


Basic Information

Item Value
RNA id TU1956390
length 1772
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G1707956
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12117290 ~ 12121159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggccatactgtgtacataacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacaagtacacaagaggccatacatactgtgtacacaacccaacacaatactgtagcagtatcctacaagtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacaagtacacaagaggccatacatactgtgtacacaacccaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacaagtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccataatgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacaaaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtaccctacatgtacacaagaggccatactgtgtacaaaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagcagtatcctacatgtacacaagaggccatactgtgtacacaacacaatactgtagaagtATCCTACAAGTACACAAGAGGCCATACTGTGTACACAACACTGTAGCAGTATCCTACAAGTACACAAGAGGCCATACTGTGTACACAACACTGTAGCAGTATCCTACAAGTACACAAGAGGCCATAAtgtgtacacaacacaatactgtagcagtatcctACAAGCACACAAGAGGCCATAAtgtgtacacaacacaatactgtaGCAGTACCCTACATGTACACAAGAGGCCATACTGTGTACAAAGTACAATATTAATCAAAATACTGTACACACAGTAGTACATACAACATCTGAGACTCCAGTTTAAGGGTCACATTTCATGACCTCTCTGAGGCAGACAGTGGCGTAGCAGGAAGAGTCCAGGTCAAAGTTCAACGTCAAACTAGGTGTGTCTGTGTCAGGGTACTTCACCGTTGACTCCCCCTCTCCATTACCCTGCacgctctcccctcctctctgcctctccagaCCTCCAGGTCTAGGTGTGTCTGTGTCAGGGTGCTGTGGTACCGCTCCACTAGCCTGTGACTTTCCATTCCACTCCTGTTGCCTCTCCCCAGCTCTCTGGCCCTGCTCCAGCCTGTAGGTCAggctatgtgggatggccagtaaGGGGCGGTAGCAGCCAGGGAGGTTCAGTTTGAGAGGAGTGACTCTGAAACGACAGCTCTGTAGTCCATCCCTCGCCAGTCTCTCCTGGTACCAGCCCCCTACAGGGTTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956375 lncRNA upstream 17926 12099123 ~ 12099364 (+) True G1707946
TU1956361 lncRNA upstream 40909 12075980 ~ 12076381 (+) True G1707932
TU1956334 lncRNA upstream 73430 12043614 ~ 12043860 (+) True G1707906
TU1956327 lncRNA upstream 78933 12038076 ~ 12038357 (+) True G1707899
TU1956324 lncRNA upstream 87644 12028498 ~ 12029646 (+) True G1707896
TU1956396 lncRNA downstream 5269 12126428 ~ 12128169 (+) True G1707961
TU1956401 lncRNA downstream 22268 12143427 ~ 12143788 (+) True G1707966
TU1956402 lncRNA downstream 35088 12156247 ~ 12156955 (+) True G1707967
TU1956405 lncRNA downstream 40374 12161533 ~ 12161870 (+) True G1707970
TU1956406 lncRNA downstream 43876 12165035 ~ 12165301 (+) True G1707971
XM_036956911.1 mRNA upstream 186037 11891318 ~ 11931253 (+) False pphln1
XM_036958473.1 mRNA downstream 247710 12368869 ~ 12384112 (+) True LOC118943005
XM_036956927.1 mRNA downstream 270470 12391629 ~ 12421266 (+) False LOC118942882
XM_036956925.1 mRNA downstream 276641 12397800 ~ 12401053 (+) False LOC110490813
XM_036956926.1 mRNA downstream 276641 12397800 ~ 12401053 (+) True LOC110490813
XM_036956924.1 mRNA downstream 287394 12408553 ~ 12415265 (+) True LOC118936492
TU1956174 other upstream 252717 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 462667 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 548334 11568429 ~ 11568956 (+) True G1707493
TU1954707 other upstream 718062 11398040 ~ 11399228 (+) False G1706711
TU1956462 other downstream 126869 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 457449 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 528527 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 663048 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 679609 12800768 ~ 12813728 (+) True LOC110490810

Expression Profile