RNA id: TU1956401


Basic Information

Item Value
RNA id TU1956401
length 362
lncRNA type intronic
GC content 0.45
exon number 1
gene id G1707966
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12143427 ~ 12143788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGACagactacctcaattagcctgactaaccggtgccgcCGCACATTGGCCACcctgactatctgcattgtgtccctccacccaccacctgccaacccctcttttacgctactgctactctctgttcatcatatatacatagtcactttaaccatatctacatgtacatactacctcaatcagcccgattAACTGGTGCCTGtacatagccttgctactgtatatagccttgctactgtatatagcctctctactgtatatagcctctactgtatatagcctctactgtatatagcctctctactgttaatagcctcgctactgtatatagccttgctactgtatatagcctcgctactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956396 lncRNA upstream 15258 12126428 ~ 12128169 (+) True G1707961
TU1956390 lncRNA upstream 22268 12117290 ~ 12121159 (+) True G1707956
TU1956375 lncRNA upstream 44063 12099123 ~ 12099364 (+) True G1707946
TU1956361 lncRNA upstream 67046 12075980 ~ 12076381 (+) True G1707932
TU1956334 lncRNA upstream 99567 12043614 ~ 12043860 (+) True G1707906
TU1956402 lncRNA downstream 12459 12156247 ~ 12156955 (+) True G1707967
TU1956405 lncRNA downstream 17745 12161533 ~ 12161870 (+) True G1707970
TU1956406 lncRNA downstream 21247 12165035 ~ 12165301 (+) True G1707971
TU1956609 lncRNA downstream 190145 12333933 ~ 12342212 (+) True G1708135
TU1956635 lncRNA downstream 211590 12355378 ~ 12355813 (+) True G1708160
XM_036956911.1 mRNA upstream 212174 11891318 ~ 11931253 (+) False pphln1
XM_036958473.1 mRNA downstream 225081 12368869 ~ 12384112 (+) True LOC118943005
XM_036956927.1 mRNA downstream 247841 12391629 ~ 12421266 (+) False LOC118942882
XM_036956925.1 mRNA downstream 254012 12397800 ~ 12401053 (+) False LOC110490813
XM_036956926.1 mRNA downstream 254012 12397800 ~ 12401053 (+) True LOC110490813
XM_036956924.1 mRNA downstream 264765 12408553 ~ 12415265 (+) True LOC118936492
TU1956174 other upstream 278854 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 488804 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 574471 11568429 ~ 11568956 (+) True G1707493
TU1954707 other upstream 744199 11398040 ~ 11399228 (+) False G1706711
TU1956462 other downstream 104240 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 434820 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 505898 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 640419 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 656980 12800768 ~ 12813728 (+) True LOC110490810

Expression Profile