RNA id: TU1956406


Basic Information

Item Value
RNA id TU1956406
length 267
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1707971
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12165035 ~ 12165301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATCCTCCTCCCgtcttcctttcttctctctctcttccttccttccttcctcatcctcccttttCCCATCATTCACCACCATGTTCCTCTCAGAGCCATACagttccttctctcttccttccttccttcctcatcctcccttttCCCATCATTCACCACCATGTTCTTCTCAGAGCCATACagttccttctctcttccttccttccttcctcatcctcccttttCCCATCATTCACCACCATGTTCCTCTCAGAGCCATACAGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956405 lncRNA upstream 3165 12161533 ~ 12161870 (+) True G1707970
TU1956402 lncRNA upstream 8080 12156247 ~ 12156955 (+) True G1707967
TU1956401 lncRNA upstream 21247 12143427 ~ 12143788 (+) True G1707966
TU1956396 lncRNA upstream 36866 12126428 ~ 12128169 (+) True G1707961
TU1956390 lncRNA upstream 43876 12117290 ~ 12121159 (+) True G1707956
TU1956609 lncRNA downstream 168632 12333933 ~ 12342212 (+) True G1708135
TU1956635 lncRNA downstream 190077 12355378 ~ 12355813 (+) True G1708160
TU1956644 lncRNA downstream 196169 12361470 ~ 12365511 (+) True G1708165
TU1956667 lncRNA downstream 228639 12393940 ~ 12395840 (+) True LOC118942882
TU1956741 lncRNA downstream 291551 12456852 ~ 12457169 (+) True G1708247
XM_036956911.1 mRNA upstream 233782 11891318 ~ 11931253 (+) False pphln1
XM_036958473.1 mRNA downstream 203568 12368869 ~ 12384112 (+) True LOC118943005
XM_036956927.1 mRNA downstream 226328 12391629 ~ 12421266 (+) False LOC118942882
XM_036956925.1 mRNA downstream 232499 12397800 ~ 12401053 (+) False LOC110490813
XM_036956926.1 mRNA downstream 232499 12397800 ~ 12401053 (+) True LOC110490813
XM_036956924.1 mRNA downstream 243252 12408553 ~ 12415265 (+) True LOC118936492
TU1956174 other upstream 300462 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 510412 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 596079 11568429 ~ 11568956 (+) True G1707493
TU1954707 other upstream 765807 11398040 ~ 11399228 (+) False G1706711
TU1956462 other downstream 82727 12248028 ~ 12250124 (+) True G1708014
TU1956830 other downstream 413307 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 484385 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 618906 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 635467 12800768 ~ 12813728 (+) True LOC110490810

Expression Profile