RNA id: TU1956776


Basic Information

Item Value
RNA id TU1956776
length 314
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1708282
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12497695 ~ 12498008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAAGAGAACAATTGCTTCCTTCATTCTTGCTGACATCATCATTATCCtgaaggttctctctctctctctgtagtgggTGTAGAGTCCCAAAAGATGAACTTCTGAGATTGAGGCAGAGAGTTTAACATAGGATATTGACATCTGATATTGAGATCGGGGCTGTTGACATCATACCTTTAGTGAAAGGTGTTTCAATGATGCTTCACTCATCTGTGGGGAGAAAAGAGAAAATGACTAGGACTTGACGTtgacgcacgcacgcgcacgcacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956775 lncRNA upstream 324 12497016 ~ 12497371 (+) True G1708281
TU1956773 lncRNA upstream 1475 12495982 ~ 12496220 (+) True G1708279
TU1956770 lncRNA upstream 3034 12494347 ~ 12494661 (+) True G1708276
TU1956765 lncRNA upstream 9669 12487679 ~ 12488026 (+) True G1708271
TU1956762 lncRNA upstream 13390 12483942 ~ 12484305 (+) True G1708268
TU1956782 lncRNA downstream 6027 12504035 ~ 12510265 (+) True G1708286
TU1956780 lncRNA downstream 12692 12510700 ~ 12514626 (+) True G1708285
TU1956791 lncRNA downstream 23403 12521411 ~ 12521763 (+) True G1708295
TU1956797 lncRNA downstream 27577 12525585 ~ 12526040 (+) True G1708301
TU1956800 lncRNA downstream 46103 12544111 ~ 12544347 (+) True G1708304
XM_036956928.1 mRNA upstream 49387 12421633 ~ 12448308 (+) True LOC110490703
XM_021564167.2 mRNA upstream 78279 12417436 ~ 12419416 (+) True LOC110490708
XM_036956924.1 mRNA upstream 82430 12408553 ~ 12415265 (+) True LOC118936492
XM_036956925.1 mRNA upstream 96642 12397800 ~ 12401053 (+) False LOC110490813
XM_036956931.1 mRNA downstream 246992 12745000 ~ 12825754 (+) False LOC110490810
XM_036956936.1 mRNA downstream 247847 12745855 ~ 12822949 (+) False LOC110490810
XM_036956930.1 mRNA downstream 247851 12745859 ~ 12825754 (+) False LOC110490810
XM_036956932.1 mRNA downstream 247852 12745860 ~ 12825754 (+) False LOC110490810
XM_036956933.1 mRNA downstream 247852 12745860 ~ 12825754 (+) False LOC110490810
TU1956462 other upstream 247571 12248028 ~ 12250124 (+) True G1708014
TU1956174 other upstream 633122 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 843072 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 928739 11568429 ~ 11568956 (+) True G1707493
TU1954708 other upstream 1098467 11398040 ~ 11399228 (+) True G1706711
TU1956830 other downstream 80600 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 151678 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 286199 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 302760 12800768 ~ 12813728 (+) True LOC110490810
TU1957204 other downstream 453677 12951685 ~ 12952515 (+) True G1708635

Expression Profile