RNA id: TU1956797


Basic Information

Item Value
RNA id TU1956797
length 456
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1708301
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12525585 ~ 12526040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggtcctgcctggtgtgttccttgttcttcatgatgctctgtgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctgtagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagattttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattctccacaaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956791 lncRNA upstream 3822 12521411 ~ 12521763 (+) True G1708295
TU1956780 lncRNA upstream 10959 12510700 ~ 12514626 (+) True G1708285
TU1956782 lncRNA upstream 15320 12504035 ~ 12510265 (+) True G1708286
TU1956776 lncRNA upstream 27577 12497695 ~ 12498008 (+) True G1708282
TU1956775 lncRNA upstream 28214 12497016 ~ 12497371 (+) True G1708281
TU1956800 lncRNA downstream 18071 12544111 ~ 12544347 (+) True G1708304
TU1956804 lncRNA downstream 23656 12549696 ~ 12549954 (+) True G1708308
TU1956809 lncRNA downstream 29998 12556038 ~ 12556360 (+) True G1708313
TU1956811 lncRNA downstream 31887 12557927 ~ 12560086 (+) False G1708314
TU1956812 lncRNA downstream 31887 12557927 ~ 12560086 (+) False G1708314
XM_036956928.1 mRNA upstream 77277 12421633 ~ 12448308 (+) True LOC110490703
XM_021564167.2 mRNA upstream 106169 12417436 ~ 12419416 (+) True LOC110490708
XM_036956924.1 mRNA upstream 110320 12408553 ~ 12415265 (+) True LOC118936492
XM_036956925.1 mRNA upstream 124532 12397800 ~ 12401053 (+) False LOC110490813
XM_036956931.1 mRNA downstream 218960 12745000 ~ 12825754 (+) False LOC110490810
XM_036956936.1 mRNA downstream 219815 12745855 ~ 12822949 (+) False LOC110490810
XM_036956930.1 mRNA downstream 219819 12745859 ~ 12825754 (+) False LOC110490810
XM_036956932.1 mRNA downstream 219820 12745860 ~ 12825754 (+) False LOC110490810
XM_036956933.1 mRNA downstream 219820 12745860 ~ 12825754 (+) False LOC110490810
TU1956462 other upstream 275461 12248028 ~ 12250124 (+) True G1708014
TU1956174 other upstream 661012 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 870962 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 956629 11568429 ~ 11568956 (+) True G1707493
TU1954708 other upstream 1126357 11398040 ~ 11399228 (+) True G1706711
TU1956830 other downstream 52568 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 123646 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 258167 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 274728 12800768 ~ 12813728 (+) True LOC110490810
TU1957204 other downstream 425645 12951685 ~ 12952515 (+) True G1708635

Expression Profile