RNA id: TU1956809


Basic Information

Item Value
RNA id TU1956809
length 270
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G1708313
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12556038 ~ 12556360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaggagagaggagagagaaggagagaggagagagaggagagaggagaagagtgagaAAGaaccatggagaacaagagagaaagtGACAAAGAAAATGAATAAAGAGAATGCATAAATGAGTCAGTCAGTGATGACTTGTGCAGTCATTGTAATTAGAGATCAAAGGAGTTCCCCTgctgtgtccgtctgtctggcTGGTGTGGGTCCTCTAGAGTGGGCAGAGACGGGGTATGTGACTGGCAGCCATAGCAACACCAGACAGTCTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956804 lncRNA upstream 6084 12549696 ~ 12549954 (+) True G1708308
TU1956800 lncRNA upstream 11691 12544111 ~ 12544347 (+) True G1708304
TU1956797 lncRNA upstream 29998 12525585 ~ 12526040 (+) True G1708301
TU1956791 lncRNA upstream 34275 12521411 ~ 12521763 (+) True G1708295
TU1956780 lncRNA upstream 41412 12510700 ~ 12514626 (+) True G1708285
TU1956811 lncRNA downstream 1567 12557927 ~ 12560086 (+) False G1708314
TU1956812 lncRNA downstream 1567 12557927 ~ 12560086 (+) False G1708314
TU1956813 lncRNA downstream 1567 12557927 ~ 12560086 (+) False G1708314
TU1956814 lncRNA downstream 1567 12557927 ~ 12560086 (+) True G1708314
TU1956822 lncRNA downstream 10634 12566994 ~ 12568368 (+) True G1708317
XM_036956928.1 mRNA upstream 107730 12421633 ~ 12448308 (+) True LOC110490703
XM_021564167.2 mRNA upstream 136622 12417436 ~ 12419416 (+) True LOC110490708
XM_036956924.1 mRNA upstream 140773 12408553 ~ 12415265 (+) True LOC118936492
XM_036956925.1 mRNA upstream 154985 12397800 ~ 12401053 (+) False LOC110490813
XM_036956931.1 mRNA downstream 188640 12745000 ~ 12825754 (+) False LOC110490810
XM_036956936.1 mRNA downstream 189495 12745855 ~ 12822949 (+) False LOC110490810
XM_036956930.1 mRNA downstream 189499 12745859 ~ 12825754 (+) False LOC110490810
XM_036956932.1 mRNA downstream 189500 12745860 ~ 12825754 (+) False LOC110490810
XM_036956933.1 mRNA downstream 189500 12745860 ~ 12825754 (+) False LOC110490810
TU1956462 other upstream 305914 12248028 ~ 12250124 (+) True G1708014
TU1956174 other upstream 691465 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 901415 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 987082 11568429 ~ 11568956 (+) True G1707493
TU1954708 other upstream 1156810 11398040 ~ 11399228 (+) True G1706711
TU1956830 other downstream 22248 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 93326 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 227847 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 244408 12800768 ~ 12813728 (+) True LOC110490810
TU1957204 other downstream 395325 12951685 ~ 12952515 (+) True G1708635

Expression Profile