RNA id: TU1956813


Basic Information

Item Value
RNA id TU1956813
length 1817
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G1708314
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12557927 ~ 12560086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttagtattaaaatatatttgaggAGTGATTCAAAATGAAACAGTTGCATAGCAGAAGAAACAAACGAGCTGATGACGACGTGACAACTATTTGGCAAATGATTTAAGGATGTTTGAAATCCATTGAAATGGTTTCAGAAGAATTGACAGTGGTGACAGGGATCACTAGAGAAAGGCAGTACCTGTGCTGTAGACAACCTCCACAAGTCATGGTGGTTCACAGCTCAATGATTTACACAAGTACCATTCAATTATATACATAAGTAATGATCATTTTAGCATTTCTCTTTTCCATATCTAGAGTCTCATGTTTCACACACAGGCAATGGTCTACAACGACAATAAGAGCCATTTTGAAATaaacagttttaaaaaatgaTACAGGAAAAACAATTATGGCATAAAACATACCAGCAAACATTCTATActatcagcattgagctaaagtGGTTACTATTTCAGATAAACATTAATTTATCCACATAGTACTATTTCTGATAAACAGAGCCCTGATTCATCTATCCACATAGTACTATTTCAGATAAACAGAGCCCTGATTCATCTATCCACATAGTACTATTTCAGATAAACAGAGCCCTGATTCATCTATCCACATACATACTATGTCTGGACCCAAGATGGAAAAATGAAGACAAATGATTTATTTATTGTATAAAAATGAGAAGATGTTCAACTTCAGCTCTACTGTGTATTGGCACTTAGTTAGAGCTCCCACACACGCTTGACTATGTCCACCAGTTACTTTCAGTGAGACGTTGATATCAATGGTACAGTATGAATATGCTTCATCTTTTAGTCCGGTGGGCTGGTTTTACTACCGTATAGGGGAGAGCTGACCCTGAATAGGGACACAGTCATCATGTGAAGAGGTTCAAggctgcaccctattcccctgcatagtgcactacactgAGAACCCACATCCAAAATATATCAGCGACAAATACAAATCATGACAAAAACAAAGTGATTAACCAGTCATAACTAGCCAATGGCAATGCAGATTACACAGTAAGCAACCAATCGATTAAACACAGGATATGACATCATGGAACACCCTGCTTCTTCGCTTCTAGAAACTTTTTAAAAACACAAATTAACAAACTTAGTTGTGCCCATCCATCCTTTAAAAAATAATTTCATCTTGGTATGTAAAGCGTCTTTTGCATAAAGCCTGTGccataaaaatatatttacatacaacACCACTCTCCTAAGTCGGGTCTACTCTGGAGCACATTAAACATCTGATTCTCTGTGCAAGCTGCAAGTCATCAACACCAGGTTGTATATCATGGGACTGACAGGTATAGTTGCTATGGTTGGTCAGTGGTGGTGTACCGTATATCCTCTGTAGGCTGGGTTTACAGTCTGCTAGCTCACTCAGGGACTACACTGAAGGCCCTTGCTCATTCAGTCTATAGGATCcatagagtcagagagagagagagggagactgatgATTAGGGATCACCCTGTCCAACTTTGGCCCAGTAGCTCTGCTCCTTTACAAGTATTTTGGCCAAAACGCAATAGTTTCCCACAGCTTCTCATGTCTCTAGGGGGAAGAGATATGTGTAGCTCTTCATGGTTGATACTGTAATAGTCTGAAGTCTGCCTCAGTCTCCGGTCCCCCTCATCTTGGTCTACAGAGTGGTCCCAtagctcctccccctttctctaggggtcagaggttaaagATCGGTGACTTTGTTCTCGAGGGCGGCGGCTATCTGCTGCAGCCGCAGGGTCAGCTGTTTACTCTGGGCGGCTGGGTCCTCATCTAAAGACTGGAtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956809 lncRNA upstream 1567 12556038 ~ 12556360 (+) True G1708313
TU1956804 lncRNA upstream 7973 12549696 ~ 12549954 (+) True G1708308
TU1956800 lncRNA upstream 13580 12544111 ~ 12544347 (+) True G1708304
TU1956797 lncRNA upstream 31887 12525585 ~ 12526040 (+) True G1708301
TU1956791 lncRNA upstream 36164 12521411 ~ 12521763 (+) True G1708295
TU1956822 lncRNA downstream 6908 12566994 ~ 12568368 (+) True G1708317
TU1956845 lncRNA downstream 42031 12602117 ~ 12603411 (+) True G1708336
TU1956849 lncRNA downstream 46079 12606165 ~ 12607242 (+) False G1708338
TU1956848 lncRNA downstream 46136 12606222 ~ 12607242 (+) True G1708338
TU1956868 lncRNA downstream 66871 12626957 ~ 12627207 (+) True G1708353
XM_036956928.1 mRNA upstream 109619 12421633 ~ 12448308 (+) True LOC110490703
XM_021564167.2 mRNA upstream 138511 12417436 ~ 12419416 (+) True LOC110490708
XM_036956924.1 mRNA upstream 142662 12408553 ~ 12415265 (+) True LOC118936492
XM_036956925.1 mRNA upstream 156874 12397800 ~ 12401053 (+) False LOC110490813
XM_036956931.1 mRNA downstream 184914 12745000 ~ 12825754 (+) False LOC110490810
XM_036956936.1 mRNA downstream 185769 12745855 ~ 12822949 (+) False LOC110490810
XM_036956930.1 mRNA downstream 185773 12745859 ~ 12825754 (+) False LOC110490810
XM_036956932.1 mRNA downstream 185774 12745860 ~ 12825754 (+) False LOC110490810
XM_036956933.1 mRNA downstream 185774 12745860 ~ 12825754 (+) False LOC110490810
TU1956462 other upstream 307803 12248028 ~ 12250124 (+) True G1708014
TU1956174 other upstream 693354 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 903304 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 988971 11568429 ~ 11568956 (+) True G1707493
TU1954708 other upstream 1158699 11398040 ~ 11399228 (+) True G1706711
TU1956830 other downstream 18522 12578608 ~ 12584156 (+) True G1708323
TU1956882 other downstream 89600 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 224121 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 240682 12800768 ~ 12813728 (+) True LOC110490810
TU1957204 other downstream 391599 12951685 ~ 12952515 (+) True G1708635

Expression Profile