RNA id: TU1956848


Basic Information

Item Value
RNA id TU1956848
length 797
lncRNA type intronic
GC content 0.47
exon number 2
gene id G1708338
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12606165 ~ 12607242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtaaggtggtagctagtagtgacaggtcaacagtaaggtggtagctagtagtgacaggtcaacagtaaggtggtagctagtagtgacaggttaacagtaaggtggtagctagcagtgacaggtcaacagtaaggtggtagctagtagtgacaggtcaacagtaaggtggtagctagtagtgacaggtcaacagtaaggtggtagctagtagtgacaggtcaacagtaaggtggtacctagtagtgacaggtcaacagtaaggtggtacctagtagtgacaggtcaacagtaaggtggtagctagtagtgacaggtcaacagtaaggtggtagctagtagtgacaggtcaacagtaaggtggtagctagtagtgacaggtcaatagtaaggtggtagctagtagtgacaggtcaacagtaaggtggtagctagtagtgacaggtcaacagtaaggtggtagctagtagtgacaggtcaacagtaaggtggtagctagtagtgacaggtcaacagtaaggtggtagctagtagtgacaggtcaacagtaaggtggtacctagtagtgacaggtcaacagtaaggtggtacctagtagtgacaggtcaacagtaaggtggtagctagtagtgacaggtcaacagtaaggtggtagctagtagtgacaggtcaacagtaaggtggtacctagtagtgacaggtcaacagtaaggtggtagctagcagtgacaggtcaacagtaaggtggtacctagtagtgacaggtcaacagtaaggtggtagctagtagtgacaggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956845 lncRNA upstream 2811 12602117 ~ 12603411 (+) True G1708336
TU1956822 lncRNA upstream 37854 12566994 ~ 12568368 (+) True G1708317
TU1956812 lncRNA upstream 46136 12557927 ~ 12560086 (+) False G1708314
TU1956868 lncRNA downstream 19715 12626957 ~ 12627207 (+) True G1708353
TU1956887 lncRNA downstream 50764 12658006 ~ 12658650 (+) True G1708370
TU1956928 lncRNA downstream 105755 12712997 ~ 12732942 (+) True G1708410
TU1956931 lncRNA downstream 108919 12716161 ~ 12716917 (+) True G1708413
TU1956940 lncRNA downstream 119285 12726527 ~ 12727498 (+) True G1708422
XM_036956928.1 mRNA upstream 157914 12421633 ~ 12448308 (+) True LOC110490703
XM_021564167.2 mRNA upstream 186806 12417436 ~ 12419416 (+) True LOC110490708
XM_036956924.1 mRNA upstream 190957 12408553 ~ 12415265 (+) True LOC118936492
XM_036956925.1 mRNA upstream 205169 12397800 ~ 12401053 (+) False LOC110490813
XM_036956931.1 mRNA downstream 137758 12745000 ~ 12825754 (+) False LOC110490810
XM_036956936.1 mRNA downstream 138613 12745855 ~ 12822949 (+) False LOC110490810
XM_036956930.1 mRNA downstream 138617 12745859 ~ 12825754 (+) False LOC110490810
XM_036956932.1 mRNA downstream 138618 12745860 ~ 12825754 (+) False LOC110490810
XM_036956933.1 mRNA downstream 138618 12745860 ~ 12825754 (+) False LOC110490810
TU1956830 other upstream 22066 12578608 ~ 12584156 (+) True G1708323
TU1956462 other upstream 356098 12248028 ~ 12250124 (+) True G1708014
TU1956174 other upstream 741649 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 951599 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 1037266 11568429 ~ 11568956 (+) True G1707493
TU1956882 other downstream 42444 12649686 ~ 12651577 (+) True G1708367
TU1957032 other downstream 176965 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 193526 12800768 ~ 12813728 (+) True LOC110490810
TU1957204 other downstream 344443 12951685 ~ 12952515 (+) True G1708635
TU1957288 other downstream 445291 13052533 ~ 13053969 (+) True LOC110490642

Expression Profile