RNA id: TU1956882


Basic Information

Item Value
RNA id TU1956882
length 930
RNA type TUCP
GC content 0.49
exon number 2
gene id G1708367
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12649686 ~ 12651577 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcatgtagacagtgaaagggagaggatcatgtagacagtgaaagggagaggatcatgtagacagtgaaagggagaggttcatgtagacagtgaaagggagaggttcatgtagacagtgaaagggagaggatcatgtagacagtgaaagggagaggatcatgtagacagtgaaagggagaggatcatgtagacagtgaaagggagagggggagagagaggatcatgtagacagtgaaagggagaggatcatgtagacagtgaaagagagaggatcatgtagacagtgaaagagaggatcatgtagacagtgaaagggagagggggagagaggatcatgtagacagtaaaagggagagggggagagagaggatcatgtagacagtggAAATGCTTGCCTAAAGAAGAACAGGTCAGTTGAGGACAGGGCAGAGAAACAGATTTTATCAGGCAATAACCAGACCAGTGGGTCTCTAACTTCAGGCTATTTTAATACTGTGATCCACTAAAGCTTTTTAACCAAGGCAGTCATTTTAGACTCTGTTTAGTCAGTGGACACCAACCAATTATCTTGGAAACACTGATGATTTACCGTCGCTACCCCACTCCAGCGTCGCTACCCCACTCCAGCGTCGCTACCccactccagcgtcgctacattactccactccagcgtcgctacatTTCTCCACTTCAGcatcgctacattactccactccagcgtcgctaccccactccagcgtcgctacattactccacttcagcatcgctacattactccactccAGCGACGCTACAATActccactccagcgtcgctacattactccacttcagcgtcgctacattactccactccagcgtcgctacattactccactccagcgtcgctacattactccactccagcgtcgctacattactccactccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956868 lncRNA upstream 22479 12626957 ~ 12627207 (+) True G1708353
TU1956849 lncRNA upstream 42444 12606165 ~ 12607242 (+) False G1708338
TU1956848 lncRNA upstream 42444 12606222 ~ 12607242 (+) True G1708338
TU1956845 lncRNA upstream 46275 12602117 ~ 12603411 (+) True G1708336
TU1956822 lncRNA upstream 81318 12566994 ~ 12568368 (+) True G1708317
TU1956887 lncRNA downstream 6429 12658006 ~ 12658650 (+) True G1708370
TU1956928 lncRNA downstream 61420 12712997 ~ 12732942 (+) True G1708410
TU1956931 lncRNA downstream 64584 12716161 ~ 12716917 (+) True G1708413
TU1956940 lncRNA downstream 74950 12726527 ~ 12727498 (+) True G1708422
TU1957029 lncRNA downstream 119145 12770722 ~ 12771387 (+) True G1708492
XM_036956928.1 mRNA upstream 201378 12421633 ~ 12448308 (+) True LOC110490703
XM_021564167.2 mRNA upstream 230270 12417436 ~ 12419416 (+) True LOC110490708
XM_036956924.1 mRNA upstream 234421 12408553 ~ 12415265 (+) True LOC118936492
XM_036956925.1 mRNA upstream 248633 12397800 ~ 12401053 (+) False LOC110490813
XM_036956931.1 mRNA downstream 93423 12745000 ~ 12825754 (+) False LOC110490810
XM_036956936.1 mRNA downstream 94278 12745855 ~ 12822949 (+) False LOC110490810
XM_036956930.1 mRNA downstream 94282 12745859 ~ 12825754 (+) False LOC110490810
XM_036956932.1 mRNA downstream 94283 12745860 ~ 12825754 (+) False LOC110490810
XM_036956933.1 mRNA downstream 94283 12745860 ~ 12825754 (+) False LOC110490810
TU1956830 other upstream 65530 12578608 ~ 12584156 (+) True G1708323
TU1956462 other upstream 399562 12248028 ~ 12250124 (+) True G1708014
TU1956174 other upstream 785113 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 995063 11653901 ~ 11654623 (+) True G1707462
TU1955767 other upstream 1080730 11568429 ~ 11568956 (+) True G1707493
TU1957032 other downstream 132630 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 149191 12800768 ~ 12813728 (+) True LOC110490810
TU1957204 other downstream 300108 12951685 ~ 12952515 (+) True G1708635
TU1957288 other downstream 400956 13052533 ~ 13053969 (+) True LOC110490642
TU1957306 other downstream 448264 13099841 ~ 13101833 (+) True G1708702

Expression Profile