RNA id: TU1956931


Basic Information

Item Value
RNA id TU1956931
length 453
lncRNA type intronic
GC content 0.41
exon number 2
gene id G1708413
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12716161 ~ 12716917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGGTAAGAGGCAGTCTGTTAGGAGGAGTTTGAAGAGCGTGGTAAGAGGCAGTGTGTTAGTAGGAGTTTGAAGAGCGTGGTAAgaggcagtgtgttagtagaagTTTGAAGAACGTGGTAAGAGGCAGTCTGTTAGGAGGAGTTTGAAGAGCGTGGTAAGAGGCAGTGTGTTAGTAGGAGTTTGAAGAGCGTGGTAAGAGGCAGTCTGTTAGTAGGAGTTTGAAGAGCGTGGTAAGAGGCAGTCTGTTAGTAGGAGTTTGAAGAGCGTGGTAAGAGGCAGtcatacagttccttcagaaaatattcacaccccttgactttttccacattttgttgtgttacaaggtgggattaaaatgtatttaattataaTTTATCTCTCaaagatctacacaaaatactctattaTATCAAAGTGTAAGAAAAATTTGAACATTGGTGGGGGGAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1956887 lncRNA upstream 57511 12658006 ~ 12658650 (+) True G1708370
TU1956868 lncRNA upstream 88954 12626957 ~ 12627207 (+) True G1708353
TU1956849 lncRNA upstream 108919 12606165 ~ 12607242 (+) False G1708338
TU1956848 lncRNA upstream 108919 12606222 ~ 12607242 (+) True G1708338
TU1956845 lncRNA upstream 112750 12602117 ~ 12603411 (+) True G1708336
TU1956940 lncRNA downstream 9610 12726527 ~ 12727498 (+) True G1708422
TU1957029 lncRNA downstream 53805 12770722 ~ 12771387 (+) True G1708492
TU1957019 lncRNA downstream 54682 12771599 ~ 12842545 (+) True LOC118943029
TU1957035 lncRNA downstream 168727 12885644 ~ 12885849 (+) True cmas
TU1957165 lncRNA downstream 184366 12901283 ~ 12907083 (+) True G1708602
XM_036956928.1 mRNA upstream 267853 12421633 ~ 12448308 (+) True LOC110490703
XM_021564167.2 mRNA upstream 296745 12417436 ~ 12419416 (+) True LOC110490708
XM_036956924.1 mRNA upstream 300896 12408553 ~ 12415265 (+) True LOC118936492
XM_036956925.1 mRNA upstream 315108 12397800 ~ 12401053 (+) False LOC110490813
XM_036956931.1 mRNA downstream 28083 12745000 ~ 12825754 (+) False LOC110490810
XM_036956936.1 mRNA downstream 28938 12745855 ~ 12822949 (+) False LOC110490810
XM_036956930.1 mRNA downstream 28942 12745859 ~ 12825754 (+) False LOC110490810
XM_036956932.1 mRNA downstream 28943 12745860 ~ 12825754 (+) False LOC110490810
XM_036956933.1 mRNA downstream 28943 12745860 ~ 12825754 (+) False LOC110490810
TU1956882 other upstream 64584 12649686 ~ 12651577 (+) True G1708367
TU1956830 other upstream 132005 12578608 ~ 12584156 (+) True G1708323
TU1956462 other upstream 466037 12248028 ~ 12250124 (+) True G1708014
TU1956174 other upstream 851588 11863662 ~ 11864573 (+) True G1707772
TU1955728 other upstream 1061538 11653901 ~ 11654623 (+) True G1707462
TU1957032 other downstream 67290 12784207 ~ 12785502 (+) True G1708495
TU1957013 other downstream 83851 12800768 ~ 12813728 (+) True LOC110490810
TU1957204 other downstream 234768 12951685 ~ 12952515 (+) True G1708635
TU1957288 other downstream 335616 13052533 ~ 13053969 (+) True LOC110490642
TU1957306 other downstream 382924 13099841 ~ 13101833 (+) True G1708702

Expression Profile