RNA id: TU1957220


Basic Information

Item Value
RNA id TU1957220
length 427
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1708651
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 12981778 ~ 12982204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtgtctctgtgatcttgtcaagataggatggatttgatatatgcctgttgatatgtgtatttggtttatggttctgagtttgagaaaataacatagtttaggagacaaagctgaacgataaattatgcctatgctgtctggctatgtgtgtctttgctataaaggatctcagttgcaatgtgtaagggactctcagagaattcatttatagacgctgaattgatctgagagtcacagggttgtgatggagttcctataattaaagatggactttgtgataactaactctgacttgtgtgtggtttgctctcatgatttggtaaatacaggaaatttccacgacagtcaCCACCAAAATTCGTCCTCACCATTCTATAGGCTACAGATTTGAGTCACTACTGGAATAGTTATTTTTATGTTATAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1957219 lncRNA upstream 2430 12979131 ~ 12979348 (+) True G1708650
TU1957215 lncRNA upstream 17009 12964541 ~ 12964769 (+) True G1708646
TU1957212 lncRNA upstream 20922 12960461 ~ 12960856 (+) True G1708643
TU1957165 lncRNA upstream 74695 12901283 ~ 12907083 (+) True G1708602
TU1957035 lncRNA upstream 95929 12885644 ~ 12885849 (+) True cmas
TU1957221 lncRNA downstream 285 12982489 ~ 12982769 (+) True G1708652
TU1957260 lncRNA downstream 17246 12999450 ~ 12999709 (+) True G1708674
TU1957275 lncRNA downstream 92725 13074929 ~ 13079923 (+) True G1708683
TU1957295 lncRNA downstream 101589 13083793 ~ 13085231 (+) True G1708695
TU1957305 lncRNA downstream 116790 13098994 ~ 13099601 (+) True G1708701
XM_036956948.1 mRNA upstream 6985 12970913 ~ 12974793 (+) True LOC118942885
NM_001124190.1 mRNA upstream 96008 12867488 ~ 12885770 (+) False cmas
XM_036956944.1 mRNA upstream 121410 12844103 ~ 12860368 (+) False LOC118942883
XM_036956956.1 mRNA downstream 32962 13015166 ~ 13030251 (+) False LOC110490630
XM_036956950.1 mRNA downstream 33643 13015847 ~ 13034215 (+) False LOC110490630
XM_036956953.1 mRNA downstream 33646 13015850 ~ 13034215 (+) False LOC110490630
XM_036956954.1 mRNA downstream 33704 13015908 ~ 13025288 (+) False LOC110490630
XM_036956949.1 mRNA downstream 33706 13015910 ~ 13025288 (+) False LOC110490630
TU1957204 other upstream 29263 12951685 ~ 12952515 (+) True G1708635
TU1957013 other upstream 168050 12800768 ~ 12813728 (+) True LOC110490810
TU1957032 other upstream 196276 12784207 ~ 12785502 (+) True G1708495
TU1956882 other upstream 330201 12649686 ~ 12651577 (+) True G1708367
TU1956830 other upstream 397622 12578608 ~ 12584156 (+) True G1708323
TU1957288 other downstream 70329 13052533 ~ 13053969 (+) True LOC110490642
TU1957306 other downstream 117637 13099841 ~ 13101833 (+) True G1708702
TU1957974 other downstream 773982 13756186 ~ 13765456 (+) True G1709276
TU1958014 other downstream 938354 13920558 ~ 13926350 (+) False LOC110499758
TU1958004 other downstream 964441 13946645 ~ 13950916 (+) True LOC110499758

Expression Profile