RNA id: TU1957275


Basic Information

Item Value
RNA id TU1957275
length 888
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1708683
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13074929 ~ 13079923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAGTTCATTCAATTTTATTATGCAATACTGTTCACTTATCCTCCagtgtattttttatatatttcaaATCATAAAACTGAGCTAGTGTGATCATGAGTAATCATATGGATTCATGAGTAACATTCACCCAATCAGGGTACAAAATAAAACAGCATTAGGATCAGACAGGGGAAGGGTGCGTTCTTATTGTGCTGTCTGCACCCCTGTAAACTGGAGACATGATTACACATCTGTCCCGTGTAAAATACGGTCAAATGAAGCAGGTATAACACATTTTCAAATTTGTGAAAATAAACAAACACCTGGTAGGGTAGGCGTACCAAGGATTGGTCACAACAGATTAGAAAGTGCTTGACGGATCCCTTACAACAGAGGACAACACAGAAAATGTCTGATAAAACTGCAGTTCCTCACAATAAAATGACAGCTCTTAAGATTGTTAAAAAAAGACCAGCTCAACACGACATTAAAACGAATCATTTTGAGCCGATAGGAACTCCAGGTCCAATTCATTAAGGCAGGCCTTTGAAGGCGTTAGAAAAGTCCCTAGTTGTGGATCTCATCAAGGAGTTAGTCCAAAGTGTCTCAGTGTGGCTTTGTGTAAAGACATCGACCTGAGTgcgtgtgggggtgtgtgtgggggtgtgtgttgtGGCAGACAGGTCTATGCGTCACTAGGCTGGCTGGTCCAGGGAGTTCTTATACCAAACTACCTTATTGGGATCCATCACTGTTTCGTATCTCCTCACTGTCTCTGGCCTTCTGATGCTCTAACTTTCTTCCTGTAGGACCTTCCTCTCCATCTAAGACCTCTGAAAGTATAACAAAAAAAATCAGTTCACTCATAAttcacaaacaggacaaacatTTATATCAACATCAGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1957260 lncRNA upstream 75220 12999450 ~ 12999709 (+) True G1708674
TU1957221 lncRNA upstream 92160 12982489 ~ 12982769 (+) True G1708652
TU1957220 lncRNA upstream 92725 12981778 ~ 12982204 (+) True G1708651
TU1957219 lncRNA upstream 95581 12979131 ~ 12979348 (+) True G1708650
TU1957215 lncRNA upstream 110160 12964541 ~ 12964769 (+) True G1708646
TU1957295 lncRNA downstream 3870 13083793 ~ 13085231 (+) True G1708695
TU1957305 lncRNA downstream 19071 13098994 ~ 13099601 (+) True G1708701
TU1957318 lncRNA downstream 37808 13117731 ~ 13118685 (+) True G1708712
TU1957338 lncRNA downstream 67347 13147270 ~ 13147502 (+) True G1708730
TU1957340 lncRNA downstream 69455 13149378 ~ 13149701 (+) True G1708732
XM_036956971.1 mRNA upstream 560 13070036 ~ 13074369 (+) False LOC110490647
XR_005038533.1 mRNA upstream 560 13070036 ~ 13074369 (+) False LOC110490647
XM_036956972.1 mRNA upstream 560 13070037 ~ 13074369 (+) True LOC110490647
XM_036956967.1 mRNA upstream 8135 13058705 ~ 13066794 (+) True LOC110518396
XM_036956968.1 mRNA upstream 16472 13051847 ~ 13058457 (+) False LOC110490642
XM_021564127.2 mRNA downstream 147875 13227798 ~ 13229394 (+) True LOC110490653
LOC118942887 mRNA downstream 151152 13231075 ~ 13231826 (+) True LOC118942887
XM_036956994.1 mRNA downstream 618594 13698517 ~ 13725137 (+) False LOC110500963
XM_036956480.1 mRNA downstream 659135 13739058 ~ 13748205 (+) False crp
NM_001124725.1 mRNA downstream 659548 13739471 ~ 13748205 (+) False crp
TU1957288 other upstream 20960 13052533 ~ 13053969 (+) True LOC110490642
TU1957204 other upstream 122414 12951685 ~ 12952515 (+) True G1708635
TU1957013 other upstream 261201 12800768 ~ 12813728 (+) True LOC110490810
TU1957032 other upstream 289427 12784207 ~ 12785502 (+) True G1708495
TU1956882 other upstream 423352 12649686 ~ 12651577 (+) True G1708367
TU1957306 other downstream 19918 13099841 ~ 13101833 (+) True G1708702
TU1957974 other downstream 676263 13756186 ~ 13765456 (+) True G1709276
TU1958014 other downstream 840635 13920558 ~ 13926350 (+) False LOC110499758
TU1958004 other downstream 866722 13946645 ~ 13950916 (+) True LOC110499758
TU1958344 other downstream 985926 14065849 ~ 14066683 (+) True G1709592

Expression Profile