RNA id: TU1957306


Basic Information

Item Value
RNA id TU1957306
length 1961
RNA type TUCP
GC content 0.41
exon number 2
gene id G1708702
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13099841 ~ 13101833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCATGTGACACCAAATACCATTTATTAGGGCTTTACAAAGACTACAAAATCCCTCCAGATGATTTAAATCGCTGTCTCTGTCTATTTACACGATATGTTACATACAAATgtacaaaatataaaacatttaagGACAAATGTTTCAACCAAAAAAGAAACTCTTCTCTCAAAGCAGTAAATGTTTTCAACTGAGATGTCATTGAGATTGTATGGTGTCACCATGACATAATGGTACACTGTTTGTGTTGTGAAAACATCTGGTTAACTAGGCAACTGATTGTGTcctaggggagcagggaggagtgaCTAGATGTCTGCTGTGTTGGAGGGGAGCTATgtcttactgactgtgtgtgtgtgtgtgtgtcaggctctAAGTTTAGATGCAGGCAGGCTGATGGGGTAGACCAACGATGATGCGTGGAAAAACTAAATAAAACATACATTTGTCACAGCCAAGTGATGACAACAAGAGCTTGTCCTGAGGTTGTGACAACATTTTCTGCAGAAAATGGATTCTGATAGATTTAGTTGACCAGTAGCACCTGTTATTTGGAATTGTAAATAGCACAACAGCAGGAAAATAGTACCTCAGAATGGgatgtcaaaaaaaaaaaaaaagattctacTAAAACCGAATACAAGACTGAATGAAAGTATATTCAGAAATGTTACAGTGTAATGCTTTGTGAAGTGAATTTTCGCCTGTTGAATAGGGGGATGAGTCACCAAATGCTAGTTCCAGAGAATACACAAAAGGGAAATCTGTGACAATGACCAGATTTGCTTTTCTTGATAAATTGAATGGTTTGCTCCTCAAATCAGTGATTTAGTGAACATTAACATACAgcgttttaaaataataatatcaTACTGTACATCGCATGCCTCCTGCATAGGCAAGACAGCCAATCACCACAAGACATACACCTGTTTCTGACAGCTTGTTGGTTTTTTGCATttctattttgtatttttgttgcAACGTACAATAATTCTCAGCGAGTTAAAGCGTAATATAACATCAACAGGGAAGAATGCATCTCTGATTCACTGTGCAATACTTTATTATTTACACCCCCACTTTAGCTGTGCAAAACCAACCCACTCATTAATGGAGGAAGGACAATCAAAATCCAAAATGGCTTCTGTCCCTTCCACACGCTGTTATGTAAAAGTAAAAGTCTCCTTCAAAATGTTCCCCCCTAGAAAGCTTAAAACATGCTCCTTAGGCTATAAAATCAAAAGGGTCGGGTTGTGCTCATGACATTTCAAGTGAACCCAGCTCAACTGGGTAAAAGCAACAACTAAAAAAATGCCCACCCCTTTGAACTTTTATACAATTGGTCAGTTCCACTTGCAAATACAGTATAACAGCCATTTTGCTTGTACAATATTACTGTCAGAAACAAAAGTGGATGGTTTTGGGCAACATACTTTGACAGGATCTGTGAGATATTTTGGCCTAAAAGTAGTTATAAAACTCTCCTTCACTGTACTGAAATTAAAGCACCCACTGAGACGATACGGGACCACTTCATTTGAATGGTTGTGTGTCAGGAAGTGTGTGTTCCTGTCAATCTCCTATCCACTCGGGATGGTCAGCAGGGAGCCAAAGGCTGAAGTAATACACCCGTCTCAGAGCTTTGCATTGAGAAAGCACCAATATCAGGCTTGTACTGTTCTTGACCTGGCCCTTGGATTGAAGGAGCCACCCCTCCCTTCAGCACCCATCTGTTGGCATAGTGCTGTCCATCTTTTAAGGAAAGGGTGAACAACAGGTCTGCTAGTGTGAAAAGCCTAAAAGGACTGTGGATGTGGACGGACACGTCACAGTGCCCTTGGCAGTATATCAAACGGTAACACGGGCACTTGTCCATTGTTTCACAGTAGCAGTAGGTTGGACGACACACAGTGCTCTTTTTGTGCTTGTTGGCGAGGGGTGTACGGAGGGTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1957305 lncRNA upstream 240 13098994 ~ 13099601 (+) True G1708701
TU1957295 lncRNA upstream 14610 13083793 ~ 13085231 (+) True G1708695
TU1957275 lncRNA upstream 19918 13074929 ~ 13079923 (+) True G1708683
TU1957260 lncRNA upstream 100132 12999450 ~ 12999709 (+) True G1708674
TU1957221 lncRNA upstream 117072 12982489 ~ 12982769 (+) True G1708652
TU1957318 lncRNA downstream 15898 13117731 ~ 13118685 (+) True G1708712
TU1957338 lncRNA downstream 45437 13147270 ~ 13147502 (+) True G1708730
TU1957340 lncRNA downstream 47545 13149378 ~ 13149701 (+) True G1708732
TU1957342 lncRNA downstream 49703 13151536 ~ 13151741 (+) True G1708734
TU1957344 lncRNA downstream 52465 13154298 ~ 13154616 (+) True G1708736
XM_036956971.1 mRNA upstream 25472 13070036 ~ 13074369 (+) False LOC110490647
XR_005038533.1 mRNA upstream 25472 13070036 ~ 13074369 (+) False LOC110490647
XM_036956972.1 mRNA upstream 25472 13070037 ~ 13074369 (+) True LOC110490647
XM_036956967.1 mRNA upstream 33047 13058705 ~ 13066794 (+) True LOC110518396
XM_036956968.1 mRNA upstream 41384 13051847 ~ 13058457 (+) False LOC110490642
XM_021564127.2 mRNA downstream 125965 13227798 ~ 13229394 (+) True LOC110490653
LOC118942887 mRNA downstream 129242 13231075 ~ 13231826 (+) True LOC118942887
XM_036956994.1 mRNA downstream 596684 13698517 ~ 13725137 (+) False LOC110500963
XM_036956480.1 mRNA downstream 637225 13739058 ~ 13748205 (+) False crp
NM_001124725.1 mRNA downstream 637638 13739471 ~ 13748205 (+) False crp
TU1957288 other upstream 45872 13052533 ~ 13053969 (+) True LOC110490642
TU1957204 other upstream 147326 12951685 ~ 12952515 (+) True G1708635
TU1957013 other upstream 286113 12800768 ~ 12813728 (+) True LOC110490810
TU1957032 other upstream 314339 12784207 ~ 12785502 (+) True G1708495
TU1956882 other upstream 448264 12649686 ~ 12651577 (+) True G1708367
TU1957974 other downstream 654353 13756186 ~ 13765456 (+) True G1709276
TU1958014 other downstream 818725 13920558 ~ 13926350 (+) False LOC110499758
TU1958004 other downstream 844812 13946645 ~ 13950916 (+) True LOC110499758
TU1958344 other downstream 964016 14065849 ~ 14066683 (+) True G1709592
TU1958620 other downstream 1432550 14534383 ~ 14537036 (+) True LOC118942889

Expression Profile