RNA id: TU1957459


Basic Information

Item Value
RNA id TU1957459
length 202
lncRNA type intronic
GC content 0.36
exon number 1
gene id G1708846
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 13422982 ~ 13423183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atattTGTTTGTTGGAGAGGAACAGCCACTAAATTTACTTGAGGCAGGTGAGAAGAAAGTGTCAAAATATAATTAATGGTACATCCCGAAGCTACAAGAAGGAAAAATGGCAAAATATAACAGTTTGATGGATAGATGAATACCTTGAAAGTTTGCTCCTCCTCATAATTACAAAGAACAAGTCTGACTCAGAGAGTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1957457 lncRNA upstream 4289 13418478 ~ 13418693 (+) True G1708844
TU1957454 lncRNA upstream 16331 13406416 ~ 13406651 (+) True G1708841
TU1957453 lncRNA upstream 17783 13404840 ~ 13405199 (+) True G1708840
TU1957440 lncRNA upstream 20759 13377845 ~ 13402223 (+) True G1708827
TU1957374 lncRNA upstream 196207 13226452 ~ 13226775 (+) True G1708762
TU1957461 lncRNA downstream 2487 13425670 ~ 13425940 (+) True G1708848
TU1957468 lncRNA downstream 22498 13445681 ~ 13445975 (+) True G1708855
TU1957469 lncRNA downstream 24170 13447353 ~ 13447631 (+) True G1708856
TU1957476 lncRNA downstream 36419 13459602 ~ 13460407 (+) True G1708863
TU1957477 lncRNA downstream 38041 13461224 ~ 13461637 (+) True G1708864
LOC118942887 mRNA upstream 191156 13231075 ~ 13231826 (+) True LOC118942887
XM_021564127.2 mRNA upstream 193588 13227798 ~ 13229394 (+) True LOC110490653
XM_036956971.1 mRNA upstream 348613 13070036 ~ 13074369 (+) False LOC110490647
XM_036956994.1 mRNA downstream 275334 13698517 ~ 13725137 (+) False LOC110500963
XM_036956480.1 mRNA downstream 315875 13739058 ~ 13748205 (+) False crp
NM_001124725.1 mRNA downstream 316288 13739471 ~ 13748205 (+) False crp
XM_036956479.1 mRNA downstream 316474 13739657 ~ 13748205 (+) True crp
XM_036957001.1 mRNA downstream 371796 13794979 ~ 13950432 (+) False LOC110499758
TU1957306 other upstream 321149 13099841 ~ 13101833 (+) True G1708702
TU1957288 other upstream 369013 13052533 ~ 13053969 (+) True LOC110490642
TU1957204 other upstream 470467 12951685 ~ 12952515 (+) True G1708635
TU1957013 other upstream 609254 12800768 ~ 12813728 (+) True LOC110490810
TU1957032 other upstream 637480 12784207 ~ 12785502 (+) True G1708495
TU1957974 other downstream 333003 13756186 ~ 13765456 (+) True G1709276
TU1958014 other downstream 497375 13920558 ~ 13926350 (+) False LOC110499758
TU1958004 other downstream 523462 13946645 ~ 13950916 (+) True LOC110499758
TU1958344 other downstream 642666 14065849 ~ 14066683 (+) True G1709592
TU1958620 other downstream 1111200 14534383 ~ 14537036 (+) True LOC118942889

Expression Profile